RNA id: TU17998


Basic Information

Item Value
RNA id TU17998
length 2659
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G14496
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25543046 ~ 25545725 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAACTTAATAACCACCccacatttattgatttatatatatatattatacagggCAGGGACCCCTATATTTACTTTcataacaaacaaattatacagGTTCTTTATATTcagatacaaaatatacacatagcAGATGCAAATGCTTCAAGTATCAAATGTCTctgtttatataaatgcaatcCAACATACTCAAAGACAATCATAAGGCTTAAGGCATTTCATATAACTAAATATCCTTATAAAACCTCTTGCTAGGCTTAAATTAATTCCTTGTTCAGTGCTTGGAATTACTGCCAACCCAcgtttgtttttgcttatttttaaattgtataaattaagATTTGCTGACTCAAACTGCCATTCAGTTTAAAAATTCCAGGCACCATACAGCGTTTAAACCAGAGTAGCTTGAGATAGTACAGTCTTCAGCTCCGGTGTATTACTCCTTATAGCACCTTATTTAGACACTGTAATGGTCTATAAGGACATATGAAGCAGCTATAGTCACAGAGTTGTAGGAATACCCAGAAATTCAAAGGGTAAAGGTTTTCAGAAGATCGCTGTTGCCATGTAGTCACCATATGGCTTCATAGTCGCTATGACCCTTTGAGACATAACTGGATTTAAAATTACCTTAAAGCATTAACCTTTACTTAGGAAGAGGAAGAACCATAATGCATAAAggtttataatatatttgtaatgtgtatAAGTAGATATTAGGAGTATTCGTTTTTGTTGCTTGTAGTTATGTGTTAAAGTTACGATTTATCTTCTGGTAATCAGTAGTACATTGTATATAAAACCTAATTACTCTCCCAATAAAACTGTTAACGCTGACCAGCTGTTCTCAGATTTGTCTGATCTGTGGCAGGAATAATGAACAGCGGATGATTGTTACCTCTTTGCTGTGCACAATAATTAAAGAACAGTCAGGCTTtacatacatttagttttttacaatCAATGCAGCCAATGTATAATTCTcaattgaaaaatgtgtttatttaagatTAGGGTGAATTTAAAATCATATCCCCTCTCACAGTTTCTGTTAAATTAGtttggttaatttgtttttatatgcacAGGTTTTACTGTATAAAACACCAGTCTCTTAGAATTCAAGTTATTGATTTGAATAAAAACTACCATGCCACTGCTTGGAAATGTGGAATTGCTTTTCTACCTGCTTATAGCGCCCTCCCTGTGATGAGTTGAGATTTTTCAAAGTAAATCAAAAGTGTGAGGTCAGACTTTCTAggaattataaataacaatgtgtttgtgtacaagtttgtaatttgacaTTCACTTGTAGGGCAAAGTTTGGATTTGTTCCTTTCATCCCACTGTAACAAAGTATATAACAAGAAAGACTCAAAGGACATTTTTCCAGACAAACAATGCCAGAGTCAGAGTTGGCTGCAACAAAACACCTAACGTCTGAAGGAGATTGTTTAGATACAGTAATTTCTGCACTTccaaaaatgaaacattcaaatACAGCAAGCCTACATCCTAGTTGCTAAACCAAAGAGGCTGTGCAGATCCATTGCTCCATGCCTCCATGCTACACTGTTCTGATCATGTCATCCTCGGTTCAACCCCACTCCCCCACGCTGCTCCACCATTGAGTATCTGTAACTTGTCAGACAACGTTCCCAGGTGCTATCGGACAGGATTTTCCATTGCAAACAGCTGGCAAAGAGTAACTGCATTCTTGCTGGCTGGCCCCACTTGTTGGCTTCAATCCAGAGCCACAGATTATCATGTATTCCAGTTTGTGTGTAGTCTGCTCCCACAAAAGGCTTGTTTGTCAATCCTGAGATGAAAAAATAGTGTACAAAATCACTGTGTTAAATTTATGGCCTTTATACAGAGCTAAGCAGAGGAAGGCACCTCATGTCACAGAGTCCCTGAGTAGAGCACGGCTCAATGTTTACAATCGCTTCGGTTTTTAAGGCCTACAGTACCATATATTATCATCATATGctcctttttaatttgttgattGGTAGGATTTGAAATGTGGAAGAAAACTATGAGTCACTGCAAAGTAAAGAGAGATTTACGTTTAAAATATCTTCTTGttcaagaaacacacaaaggcacacacacactggatgAAACTTCACATTTTGTATCTCTCCTACCAGTCAAATCTCCtcataagattttttttaatatgctagTGATAATATATTAACTGTCAGGAAAAAAGCCTTTGAAGCTTGTAGAGAAAGAAGAGATTCCAGATTCCAGCTGGTCcccaataataaatacaatttcacacacacacacacacacacacacacacggtatatatctctatatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagcgtggcatggttgttggtgccagacgggccggtctgagtatttcacaatctgctcagttactgggattttcacgcacaaccatttctagggtgtgaaaagggaaaaacatccagtatgcggcagtcctgtgggcgaaaa

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17979 lncRNA downstream 22950 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA downstream 22950 25516989 ~ 25520096 (-) False G14487
TU17955 lncRNA downstream 128948 25413316 ~ 25414098 (-) False AMCG00016591
TU17952 lncRNA downstream 137945 25404895 ~ 25405101 (-) True G14472
TU17860 lncRNA downstream 420671 25122090 ~ 25122375 (-) True G14400
TU18009 lncRNA upstream 59055 25604780 ~ 25609059 (-) True G14507
TU18019 lncRNA upstream 126579 25672304 ~ 25675200 (-) True G14517
TU18107 lncRNA upstream 372305 25918030 ~ 25921548 (-) True G14578
TU18115 lncRNA upstream 426061 25971786 ~ 26022263 (-) True G14585
TU18117 lncRNA upstream 427809 25973534 ~ 25979563 (-) True G14587
AMCG00016594 mRNA downstream 59336 25449909 ~ 25483710 (-) True AMCG00016594
AMCG00016596 mRNA downstream 93294 25439336 ~ 25449752 (-) True AMCG00016596
AMCG00016595 mRNA downstream 104271 25433834 ~ 25438775 (-) True AMCG00016595
AMCG00016590 mRNA downstream 119387 25421283 ~ 25423659 (-) True AMCG00016590
AMCG00016591 mRNA downstream 122675 25413574 ~ 25420371 (-) True AMCG00016591
AMCG00016597 mRNA upstream 65838 25611563 ~ 25642333 (-) True AMCG00016597
AMCG00016600 mRNA upstream 130844 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016599 mRNA upstream 160356 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016601 mRNA upstream 279021 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016614 mRNA upstream 559191 26104916 ~ 26117450 (-) True AMCG00016614
TU17858 other downstream 265568 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 459347 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 527703 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 531268 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 660948 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 207270 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 535778 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 610796 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 636019 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 636019 26181744 ~ 26184778 (-) True G14676

Expression Profile