RNA id: TU18004


Basic Information

Item Value
RNA id TU18004
length 7051
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G14502
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25604639 ~ 25611689 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGTTAATATAATGTGACATTTTAGACAAGATCAGATTTTTCCCCTCTCTCGTTTATTATCCTGCGTGCTCTCTGGTTGCTATGGATGCTCAGGGAGATTGATttagaagaacaagaaaaaaagacgCACAAGAGCTGAAGATGTTACACTCGGCGCTTTATTAAAGTCATGTCCGAGGCTCCTCGGTCTAAACTGTCATGCATAAAGAGAGCGAGGGGGCCAGTGGGAGGATGGTGCAGATTGTGGGATTAGTGCTGGCATTTTCCTTTCTGTCTCACTGGTGGAGATTATATAGCAGCTGCGTCGGAGGCCATCTGATAGCGTCTCCAACCTTGTGCCCTCGGTTCTCTCTCCAACATTTATAAACAGTGACTTTAGTGCAGCTCCAAGCATGTCCAGGAGAGGCACCACCTCTCACAACTGACTTTGTGTCAAACTCAGTTAAATCACTGTCTCATATGTTTTTGGACCAGCAGACCAGCAGTCTAGGGATCTCAAGGGTAGCGATACTCCTAGTTAGGAGTATCACTTTAcactcacaaaataaacaatgctaaTTATGCTCCTAGGCCAAATTATTCTACGTTGATAGATGATTGTGTCTGTATTtgcacacatttgtaaaatatccAGATTGCTGGGAAGGCTGTACAAATGAGCAATGCCTTTGGTGGAATATCTACctgaaaactgcattttaagcTTGTGAAAAATGCAGTAATGTATAAGCCTTTTGCAGCATGTGTTTAAAGCAATTTACTCATCAATATCCTCTGACCCGTCTCCCACCTTTGCCTTGCCCTGCAATATAGAACATTCCATATAGATCCAGACATACAGAGATATATTAgtagtatatacatatacacccACACAGGTCTGGACAAAATTGAGACCACTaacaacattgatttctgaacttggagtggtctcaattttttctagagctgtatatatatatatatgcacatgcacacacatatataattttatttttgtatatatttacatagcAAGATACATTTACAGAACTAGAATCATTAAACTAATTATTGCCATATTGCGCAAAGTATGACAGGGCTCTCAGCCGTgtcacaaagaaagaaaataacccCCTAGTGATCCTTGCAAGGGTTCAGACTAGCTTACTGTACAGCGCTTTTCAACAGCGACACTTCAAAGCGCACAGCCGTTGGTAATGAGAGGAGGAAACGCTGCCGAACAGTGCTTTCTGGCTGCCACAACCCATTCAGTGTGTGGACACTGTGAGATGAGAGGTGTTTGGAAAGTTGCCTCTAGACTGAAATAGGattacatattttggtttggtttactTTTTGTCTAGGAAAGGTGTTGGGATTCCTTCCACagacaatggaaaaaaaacagattaattgttattaatatttcactCCCCTGTTCAACAAGGAACTGTAAAAATGCTTGGCAGTACTACAGCTACCTATTGTAGTGaggtgtgatttatttttggatCAGTTTGCAAATGAAAGCGAGAAAGCAATTAACAGAAGACAATATGACGTAAATATGGGACTACACAATATATAatgacatgattaaaaaaagaggTCAACTCATATATGACTCATACATGATCTATTTTATTGACCCTCGTGCATTATCACTAAAATGTCAGTTTGGAATAGTCTTAATGCATGTTGTTTCAGTGTAGAGGCAACTAGGGGATGATTCGTTAGTATTGGCTCCATTTTGCAGCACTATCGTCAAGCAGCATCCAGAGACCCTTCATTGTCTTCCATTACATTTAGTGCATCTTCTTGTGACTTCACCATTACAGCCCCAGCATGGCCTGGGGCATGTTTTTCCAGTTGGTAAAAGATTTATTAATGAGTAAGGATGGTGTGTATGTTTGTTAGAGTTACTGTACCTTAACATACCTACAGATTATCTATTCTCATAAATGGCTGCAAAAAGTCCcattaaaaaactatttgaaaaactgcaaaatgtaataaatcaaattagaaCCAGTCTTACTCATGAGTAGATGTATTACCAACCAAAATGTTCTATTAtactaatttagtttaatttatactaatagagggggtgggggttgtatGAAATCACCAAATATTTGGATGCTGCTCAGAGGAGTTCTTTATACAGATGGTCTGCATACTGCAAACAGGGACTTCTCTGTAgatacaacaaacacaacagcaaccTTGTTGTTTCCATTTGCTACAGTGCTGAAAAGGGTCTGTATTTAGTCCTGTGCTTTTTCTGTCAGTGTTGGAGTGATGTCCAGAGCTTTTCAATGGTAGGCTCCTTTGGGGGGTGTCTCTGGATCAGTACATTAGGAAAGGGTCCAACAAAGGCTGTCAGAGAATGAATAGTGTGATGGACCTTGTAGGTATACATTCTTCTTTTCAAGCCGGTTTACTGTGGGTGGCTGCTTAGCAGAGCTATAATTGTTATATAACATCTGGTAGATCTTgatccccttttttttttctcccattttcTCCAAGACACAGTTGCTATTTCTGTCAACGGCTTTCACAGGATTCTGTCTCCTGACCTTTCTCGTAAACATTCAGTTGCGCAGAAGAAAATATCCCTGTAGACAGAGACACTGGCAGAATGCAAAGAGAAGGAGCTGGGAATTGCTTGAGAGAAGGAGCTTTTCTTagacaatggaaaaaaaaaatgtttaacaatGTAGGGACCTATACACGTGACATTCAGTTCAGTGGCAAGCTCCCTTTCCATTTCCATCACACACAATATACGCCAAGTATTGACAACAGTACAAGAAGACAGCTATAACACCACACTTCGATCAGTGCCCGTCCCGGGGGGGAATGGCTCAAAGACATATCAGTCATTTCCAAACTCTTCCATCACATATTCTCAGAGGGCAGCATCAAAGAGCCCGAACAGTGAGAGcaaattttaataacattaaatctGCTTTGCTTTTCCCACCCCAGCCGATTTAATAGGCTTAGAAAAATGCTCCAAAAAATTGTGATTAAACACTTGTTCCATAACCTCATTTAAGGTCATTAATATACTGCAACTCTACTTTGAGCAGGCTGTGTCTGCTCACAAACATTTGAGAAAAAATCAAGTCTTTTCAAGTGcatcatttgtattatattaccATTCCCACACAATACACAGTTATACAGTACTTATGAAACACAAAGCTATAGGTTTTTAAAATTACTCTTCATTTGAATGTGCTACAGCAGTTGCTGGTATTTTTAAACAGCAAATATTTGGATATGTGTGTTAGACAAATACATGTAACGACAATGCAAAGATTAATATTGCCAGTTGCATTCAGCACACTgtgcaaaggaaaataattgacATGCATGTCTCTAAATACACaagtctgtttcctgttttctgtggcTTGTTCCCTACTGGAATTGAATGCCGCAATTAATAAAGTGCAAGTGCAGCTATAAATAACAGGTGAGCTACTGGAGTCTAAATTAAGGCTGTGTAAATCCCAGTGCAGCACAGGTCTGGAGAGAAGCCAAACAGGGCAGGGAGAGGAACGCCGATTATCACAGACACCTCACTCTCAGACATAGATGCACACcttacactctcacacactcacaagcCTGACTAGAAACACTGTAGTGCTTTTCAGAAGCATCAGTTTTACCAATTTTGTGTTCCTCACAAAATCCACTACCTGTAAGTCAAAAGTCAGATGAGATTGTTGGATCTGTTGAGAGAGATGGTCTGATCAGCCACCTTGTTTTGCAATCTTCCTTATGCTCTTAAACATGACTGAACCTATAAACACATCAGCtgtactttcttttttatatttattcataaattaatacatatatatttggacTATTAGGGTACTTACTGCagcattttctacacattttctttttttacatatagTACTTTTTCTCCCACTCGGACTTCACCTTATATTCCACATATATCTTTATAAAGACAAACTGTTATACAATTgtagtcaaaagtattcaaaGCCTTTAATTGAAACAAGGCAATTTAGTGATTCactaatttaattatacaaatcaaGGTGATTAAACTACACTAATGTTACGTGTAGTTAAGACAGGGGTTGTGCAAACTGATCTCCAAGTCTCTTGTCCACCTCCTGTGCCAACAAGATGAATCCAGGTTGAATCAGTGTCCAGTACCCTCTGAAATGTTATAATTGATCTATTCAAATTATGTCATTAACAATTATTCAGAAAACTAAACATCACTGAATAACACTGTTTCAAATGCAggttgtgaatactttccgCTGATCTCACAGAAGCACACGTGCACACAACCCTTATGCTAAATATACAATCACAAAGACCCACAGCTCAAAATCCACCCCTGCACTCAGCCCTCATATAGCAAGTGTGAGTGTATAGATGCCACCAATCCCCTTCCCtgtcctcccctcccccactcccTGGCCCAACTCCTCCTGCAAATCACTCCCTCTGCACCGCACTGGGAGGCACGCTGAGCACCAGACAGTCAGGAAGAGCACATTCAAGCCCTTCACACGGATGCtttgacagatttttttcttcctttcaaaaGACAATAATCTCTTCAAGGAGCTGCTGCTCCTCTTTGTGAAGCTGTCGCGCAGTTTATTTATAACTCCCTTCCTCTCTGCTGGCTTGATGAAACAGGCTGGGTCTGCTGGTGCGAGGCAATAATCCAGGCATGGATGACGACTCTCCCCACAGAGCGGCACTCAGTAACAGCCCTCTGACTCCACCTCTCTCAACTGGGACTGATCCCATCTCTCTTTCCAGGGGCCCGTACACCGGTTATTCACAAATGAGGACCTTTTTCTTAAAACTGTACATCATCCTATCAAGCGGGAACTACAGACCCCTGGAGATTAcataattgaaaacaatatgcTCAAATTAGGAACCATACTTAATAATGAGCCCATTGATTGCCAAGTTGTGTGAATCAAACATgcacatgaattaataaatgttcAGAATGTGATTGCGCATGCTtttatcttatatatatattttcaactacGTTATCTCTGGGGCTCCATAGGAAACACAAATTACTCTTTATACAAACACCCTCTTCCACACATTGGGCTTTAATGGACAGCTCTGCTGCAGTGAACTAAAGCCTGCCTTGTGAAAACCCTGGCCCCCAAAGATGCTCAGCACTAGCACTGCCAGACCCAGGGCAGGGCAGCCATGGTTAATGCTACAATCAGGTGGGATGTAAAACAATCCCAGAACAATGGATAACGCAATGTGCTCTCTTTCAAAGACACACTAAGCAAACACAGTAGCTCCTGTAGCTATATGTTCACCAGGCATATTGATACTAAAAGCTACTGTAAACTGGATGCAAAGAATAGGACAGAAAAGcatgcatattaaaaacacaagacacacacgatatactgtatatatccaTATTTGCCTgaaatatacttaaatatattgtgaaatatatattctatttccaaagatatatatgtttaaatagtgatatgtttaataaaattcattttctgtgtggCTCTGATGTACAAATGCATAGTGGAACCACTATGTGGAATATTCTTCAAATCTCTGTAATGTGTCCTATATGGAATATTGCTTAATTGCCACCAGCAGTGCTGACTGATTGAAAATGAATTCACAAATAGGCCATTAGGGTTGTTACAAAGTGTCCCAAGCCTTAGTTCCCAGAATACACACAAAGCCCAGCCACAACATGGAAAATAACAAGTGCTGTCTgtaaaaaacattgttagtgTCAAAGAAATGAGCTCATTTCCATTGCTGGATACTGTCCTGAAAACAGCTCCATTTCATTCAAACTCAAGGGACAAAAGCCCCAGGAAAATGGGATAATACACACTATATCTCTATGCAGCTTTTCACTGCCCTGGTCAGTACTAGTCTAAACACTGTGTTCTAGCTCTACTAGGAGAGATCGTAGACTGTTCAAGGAAGTGGAGTTGTGCATTCCTACTGTACAATACCaccctaataaataaatttgagACAGGACAGTACATTCCCAGTCCCACAGCTCTACCCTCTCCCCCCCACAACCCCTTCCAGCAAAGACTTTGCTGGAACAATGCAAGGAAACACATGCCAAACAATCTAGAGTACATAGCAACCTTAGAAGTGCTGTTAGAAAGCTACAAGTAAAACTACACAGACTCTGTGCGAGTCGGTTAAGGAGCAAACTCCTATCCTCTCTGTCATGCAGCGCACCTTCACCATTATCAGAATCTCCGAAGCTAGTGGTGACCTTTCCCACCGTCCCACCTCATCTTCCCTCTCTCCTGGCTGAGCCTGGCAAACTGGGAGAGGGACCTACAGTCTTAATACAGACAATGAAAGCAGCAGCTTCAGTAGAAACCTGTTTTGGATTCCCAAATTGTGCCTGAGGTCAAACTGGGTGAGTGGATACCTCCCAGGTTCGCTGCTGTACTAATTACAGTAACTCTAAGTCTctatagtagtaataataatgaaaaaaataacactaattATATCTGTAACACTTAGACctgtaattacacagtaatCACTTAAGGAGTGCCCATAGGTCCAGCCATGCAGTTTGGTGATTTGGGGGTGAACCAGTCTTCAGTGCAGGGTGTGCTGTTGGGGGGGGAATATTTGGGGTTCAGGACGAAGGCAGCGTCGGCCCGCAAACCCTCAGAACTCCAGGTTTTGCGGTGCGTGGGCCCCTGCTGTATCGCCAAGCTGCCCCCTGaccttctccccctcccctcccgcTCGATCCGAGGGTGCAATGAGGTGCAGGTTTCAGGGGTGTCCCAGGCTCAGCCACGCGCTGGGGGGCggtgtgtgtgcttttgttttttgtcggGGTGCAGGCAGCAGGAATAGGCTCAGATCTCCTCCAGCAGGTCGCAAGGGACTAGGCCACGCTTCTTCCCGCTGGTCAGCCTCAGAAAGCCGTTCACCTCCTCATTCTTCCCCACGCAGATCTGAGAGCAAGACAAGCAGGTGTGTGAG

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17932 lncRNA upstream 181613 25422443 ~ 25423026 (+) True G14455
TU17917 lncRNA upstream 238263 25363896 ~ 25366376 (+) True G14448
TU17914 lncRNA upstream 243831 25360471 ~ 25360808 (+) True G14445
TU17913 lncRNA upstream 245604 25357887 ~ 25359035 (+) True G14444
TU17836 lncRNA upstream 334444 25269838 ~ 25270195 (+) True G14383
TU18012 lncRNA downstream 60570 25672259 ~ 25678349 (+) True G14510
TU18082 lncRNA downstream 322262 25933951 ~ 25935581 (+) True G14556
TU18169 lncRNA downstream 553941 26165630 ~ 26165982 (+) True G14623
TU18247 lncRNA downstream 601605 26213294 ~ 26215317 (+) True G14695
TU18260 lncRNA downstream 622637 26234326 ~ 26304342 (+) True G14703
AMCG00016586 mRNA upstream 45432 25553480 ~ 25559207 (+) True AMCG00016586
AMCG00016587 mRNA upstream 62594 25534049 ~ 25542045 (+) True AMCG00016587
AMCG00016588 mRNA upstream 84474 25515479 ~ 25520165 (+) True AMCG00016588
AMCG00016585 mRNA upstream 195733 25407227 ~ 25408906 (+) True AMCG00016585
AMCG00016584 mRNA upstream 199799 25385070 ~ 25404840 (+) True AMCG00016584
AMCG00016598 mRNA downstream 113564 25725253 ~ 25758926 (+) True AMCG00016598
AMCG00016603 mRNA downstream 267657 25879346 ~ 25887229 (+) True AMCG00016603
AMCG00016606 mRNA downstream 294435 25906124 ~ 25918145 (+) True AMCG00016606
AMCG00016604 mRNA downstream 317888 25929577 ~ 25933057 (+) True AMCG00016604
AMCG00016607 mRNA downstream 336371 25948060 ~ 25948410 (+) False AMCG00016607
TU17920 other upstream 212799 25370296 ~ 25391840 (+) False AMCG00016584
TU17809 other upstream 447178 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other upstream 447178 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other upstream 447178 25150483 ~ 25157461 (+) True AMCG00016566
TU17806 other upstream 470760 25133198 ~ 25133879 (+) True G14361
TU18026 other downstream 114159 25725848 ~ 25740558 (+) False AMCG00016598
TU18062 other downstream 328839 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other downstream 328839 25940528 ~ 25950176 (+) False AMCG00016607
TU18257 other downstream 674174 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 815650 26427339 ~ 26432356 (+) True AMCG00016633

Expression Profile