RNA id: TU18012


Basic Information

Item Value
RNA id TU18012
length 6057
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G14510
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25672259 ~ 25678349 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaataatatagttatatatttatttatacatatatattcatagcgattaattataaaaaaaagaaaaacatgtacagCAATTATAATTCAAATAGTCACAGATGATCATTCTCACGATCATTAGCTCCACAACATAACCCCCTCCCAACCCTTTACAGAGTGAAGAGTGACACTGGCTTCACACTGGATTCACACATTGTTCAATCTGAATCCAATCCACATGATGGTATCAGTCTCATACAAAGGAAGCAACACCACTCTCAAAGCCAATTGGATAGCACAATAGACCTCTAACTGtaaataccaaaaaataaaaaaaggaaattatattttttatgacattTGTAATATGGAAATACTAAGGGATTATAACTATCCAAAGCCAGTTTTTCTGTTCCCCTTCTGGTACCAAACATACTGACTTTAGGGTTCTTCCAGTGCAAGTGAGCCTTTTtacctttaattatttatttatgataagaaagaaaacaacgtTTTTTGAAGGCCATTCAGTCATTTGCATTGAAATGCTTTCTCATTAAATGGCAACAGTCACACCAGTGGACTTATTTATTGAAAGTGTGTCGTGCAAGTCTGTACAATCCTTCACAATGAAGGACAGGCAGTTAAATCCAGGCAGGTGGGAGGTTATGGTTCATTCATCTTTGCTACATGTATAATTCTTGTCACTATTCTAGcacaggaagggagagaggagaggtcAGACTGGAcaaattcaaatgcaataaTGGTTTTGACTCACTTCCTCTACTGCGCTTCAGGCTTCAGGAGATCAAATCTGAAGTTTGTTGCCACCTAGCTTAAATGTTTCACAGTTTAGGAGACAGAGTTGAAAACTGACAATAAAGAGCAGAAATAAAAAGAGGTATTTAAAAATTCTAAATATTATTGAGTAattaccccccccacccccaccaaaaaaaaaaaaaaaacctatgaATACTCATTTCATTGTCAACTCGAATTAAAGAACCTGAGGGATCTACATATTGCTTGGTTTTGACaggtaattacattttttttacctgtaCAAAACTCTCATTTATATACCTAGAGTACTACTTCATCACACAGATGGGAATAACTGCGTGTAAATGAGCAAATCCTCTGCTGTCTTCAGACTGTCTAGTACGAACTTGCCCTGGGTCTGTaatgaaggaaaacagaaaTCCTGCTGTACAGTACTATCCTGCTGGCAAAAAATCAGAAATCCAATGTATTGTTCCCCTCATGAAGAAGTGGTACTGTTAGGTACACTATAAAGATACCTATACGTAGAGTGTGAATATAGTAAACGTAAAGTGTACTTaaatttatttctttttcattaggTTTTACACTTGACATCCGTATTCAAGTTAAAACACTTGAACTATACAGCGTCTGGACTTATAGCATAGCCAGCAGAGAGCAATATCTAGAAAGTACCAAATAGCTATGCAATGGGAGTCTTATTGGTTAACctataataaagaaaagttaAAGACAGCCATAGGCAAGCAGTCCGGCGGTGAAGGGGTTAAAGGCCAGCACTGGCTTGCCCCCCCACTGCACCACTCTGTAATCTGCTGCCATGGCACCAAAAGGGCTGGCCTGGCCTGGGGGATTGTTCAGAAACGCTGCACTCCCATATCCACTTCCAAAACTCATCTGTACAagtgaataattaaaactaaagacagtttcatttcattcagcagacaaatgtattttttaaaaagggggCAGATTTTCAGTGTTAGAGAGAAAAACATTCTGCTTAATTTGGGGaaatactgaaattattttaaaggtggTTTTCTGCCCACCCCCACTTCATGAAACtggaatatttttaaaaggatatTATCATGCCATTGTACTAGCTATACTCAACAGAGCTACAGAGCCACTGGTGTCGCTGTGGATCACACTACAGTGTTGAATGTGTTCTGAATGTTTTACACAATGTTGTGTGCAGATGGTAGAAAAGCACATACATTCCCTGTGCACTGAAGTCAATCTACCCTTTAAAAGCTGAGTCTTGGGCCCAGTTCTTAAACCAAACATTATCCTACTTTAAGATAGAAGTCTTTCATGTAGCTAAATGGTTCAGTCAATTTTATAAAACTTCCTCTCTGAGATCATGGCTTTAGGACACTGATAGGCAGCCCTGGTCATGTAGATCTGACAGATCTTACAGCTTGTGTCTCAGTTATGTAACTGGCTCGTGTATTTGCTAAAACGTAACCAACCTTTGTTTACAGGTTATTAACAGGTGGGTCTATACAGAGAGCTGCAACAACTACAGTTCGCAATGGAAACATAACGATgattcaaaaaaagaaaaaggtaaacTAGTTGGCAAAAAACATGTCAGTTTCTTGTTCCAGTAGTGTAGCCTGTTGTGCAAATCAGACGAGGCCAACACTGTCCGCGTGTGAGGCTACAGAGACCTGTCCGGACTCTCAGTCACTCTCCAtgggaaagagagaaagcaatGTAGAAAAACTGcataaaggaaaggaaatggaGAGACCGCTAGAAAGACCAATACAAGCCTCCCTCGGGTTACAGTCCCAGATGCGTGTTTCCCATGGTGAGTGTTCACAGTATTGTCACAGTTTACTCTCCTAGATATTCCAGTACACTTCATTTGCTCTCACATGATTGTCGCTAGTTTGTATCACACTTGATCATGCCCGTCTCTGTGTTTCCGGTCTCATGATTGCACTATGCCTTacaattaatttcctttattcCACGGTGTATGAATGTTAAAATCTTACAAGGAGATTCAACTCCCCTCACTTCTCACTGCTGTCTGAATTCTGCTCTTTTCTACCACCTCCCAACTTGGAAGACACATGGTGCACAAAGATGCTATTAAATCAGTAACAAATGGATAatagcaaaaacaataaaacagacagatacataaatacaatacaatacattcaaatttaagaagaattgaaataaaatgtcctttttggatatatatatatatatatatatatatatatatatggtaatgCACAATATATTTGTAGGTTGCTTCAATTATTCATATTACTATAATACCCTTAATGTATGTGCAGAATTAACTAGTGAGCACTAATTAAATGGTTTGTTATTTGCATTAAACGGGCAAAACTGCCTTGCAGTGAATAGCAATACTGAACCTTTTAGCGACATTAACTACTCATGGATGGTCCATATAGatgatttacatattttttgggCCAGTGGCACCTCCTCTTATTTCTTATAATTAAGGAATAATATTGTTCTCTCCTGCTTAATATTATTGCCGGTTTGTTACTGATTTAGTAGACACTTCAAACAACAGGTCCTAAGACACGTTGCACGTTCTTGCTTGCGTACTCACTTATCCCAGGACTGGGGCAGCTCGGGCAGAGGCCACACTGTCCTGTTGCTCCTATCTGATCATATTGGTGAGATTGGAAAGAAACGTATTAATAAAtagaaagggggagagaaaaacTGAGATGAGATTCAGCCTAGAAGGGGGAGGCTGCAAAGAGAGGAAAAAGATTTACATCATCCCAGAACAGACTCCCATGGTGTTAAAAGAAGCTTGCTTTCTCCTCCCTGCCTCACGGTACGCAGACTACAACAGAAGGGACACAGGATGCTCCGCCACATGACCTTTGCACTCCCAGACCCCTGTGGTCTCCAACAGTCAGAAAATCTGCCCCTTCTGCATGACGGGCATCAAGTGGATTTCGACAAGCCgtctacttatttatttcctcataGGAGCTGGCCATTTTACCtatttaattattctgtatgatttggtttcatttaTAGTCTGTGCCCTTTTCTGAAACTTACAAATGTGTGCAATTTTAGCCCAGCGTAAGCCTTCGCCTCATGAGACTTTgtgcaaacaaaccaaaaagaaaacaaaaacagaaaaatcttGCTCAACAGTTCATGCTAGATTGAAAAAAGTCCAGGATGTGTAAGGGTGTCTAATCCAGTCTTCTGTGCAGGAAGATGTATAGGTCCTGCCAGTCACAGTGTATATGATTGTCCTCTgccattatgttttgtttaatcctGGACAAGGTCAGGATGGCCATGCTTTCCCCGTTATAACATCGAGTGCAAATTCATCTCATCGTTTGTTGAACAACTGTGTAACTCTCTGTCCCGTTCTCGACAGTTTTCAACAAATAATTAGCTTCGTCTTCTACCAACCTTTTCTAATGATCAACTAAACTTCCTCCTGGGAGGTACTGAGCCATGACAGGACACAATATGTTTAGTCTTTATTCAGAAAAGTGTAACCAGCTTGAAAAATGAATGAGCATCAGTGGGGGGAAAACAAGCCTTTCCTTGATCCGAGCATCTGTAGCTTGTCGCTGTGCTCACGGCCTCcatgttgtcttttttattcCATGCCTGGAGCAGAGGTTTTACATCTGGGCTGAACAGTGAGATTCAGTGGAGTGTAGTCCATGACTGAGTGGCAGAAGCTCCCACAGATaagatatatacagtacttacatatgtacacaattatattaaaaaactatAATTGAAACATGCAACATTTGgcattttctcagttttttttcttccttaaatCTCATTGttcctttataaaaaatatatgaatttctTAAGTACTATGTGGAATGGAGAGGGGGacgttgtgtctgtgtgtgttgaggggCACCAGAGCTACACAGGATCAAGGGCAGCGAATCAGGAAGTACTgggaagagggagaggtagGGGGTCTGTTACTCATCATCCACAACAGAGAGTCCTCACAACATCTTTCCTCAGTGTAGTAGGGGAGGTTATAAATCTGCCCCTTTATGCCTAGTTGTCAGAGTGGGGTCAAttcagagatttattttaattgactgattaaAATAGACTAGAACCGAATATACTTGCTTCACCAGCTATGAGGAGAACCACACAATCCAAGATGGGTGTGCCTTTCAAATGAACCAGTCTGTTAAAAAGTCATTCTGCGCACTTTGATGGTCCTGTCGAGTTTGAGGATCCCAGAGGCCTGTTTTGGAAGGACACCAGTTATTGAGCACACGGTGGCGGTTGTATTTCTCCATAATATCTTATAaggaagttcctgtgcatcctCTGTCAGTCCTTTACAAATTGTGAGAGAACACGATCTCATGGAATACCTgtatctgaaaaaacaaactgcactcAAAGCAGACTTTCTAACTTCTAGTAAACCCCCACagaaaacttgtttttttttgctgaatgaACGCAGTTTACGCTGGTTTGATGTACCCGACAAGACTGGGAACCCTGCTCAGACAACAAGTTAAAAGGGTTAACGCTTTCGTGTATAGGAGGATGACAGACAACCTTTGATTCTGTGCGTCTGGTGAACGGATTGGCTTCGATTACATTTCAGGTGGATTACAGCCACTGCGCAGAGCCAACAAACTCGCTAATAGTGCATCAGAAGTAGGGGAACAAATCAATATGCAATGAAGCATCTCCCTGACATGAGGCCGTGTCAGAGAAGCCTTGAGCCTGCAAAATCCAAACATTCAATATTGGGAAGAATTAGTCTGTTGCAAAATCATAAAGGGAAGACGAGGGAGTCCGTTAATGCTATGACCTGGGAATGTTGACATGATCCTGTGTGCGCAGCGTGTGAGGATGGGGAGGAATGTCGCAGGCGTTGCCCTGTGATGTATTTTGGTGTCATCCTGACTGTCGGGGGGCCCCCAGCTCCCAGAGAAACCTGGCACCactgtggggggtggggatgggggAGCAAGGTGCTAGGAACATAGGACACGCACACACCTGTGGGCGGAGGGCGCACGCATGTGTGGGATACTCACACAGCTACAGTGTCTCTAGGTATCTGTACAGTGTCCGGGAGGTGGGgagtggaggtgggggggcagcagtgACATCATAGCAGGATGCAGCAGCGGCAGAATCTCTGCCTGCTCCCTCCCACCGACGGGGGTGGGGTGACAGGGGCGAAGTAGGCGTGGACTTTGATATTGGGGAGATGCGTc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18004 lncRNA upstream 60570 25604639 ~ 25611689 (+) True G14502
TU17932 lncRNA upstream 249233 25422443 ~ 25423026 (+) True G14455
TU17917 lncRNA upstream 305883 25363896 ~ 25366376 (+) True G14448
TU17914 lncRNA upstream 311451 25360471 ~ 25360808 (+) True G14445
TU17913 lncRNA upstream 313224 25357887 ~ 25359035 (+) True G14444
TU18082 lncRNA downstream 255602 25933951 ~ 25935581 (+) True G14556
TU18169 lncRNA downstream 487281 26165630 ~ 26165982 (+) True G14623
TU18247 lncRNA downstream 534945 26213294 ~ 26215317 (+) True G14695
TU18260 lncRNA downstream 555977 26234326 ~ 26304342 (+) True G14703
TU18261 lncRNA downstream 560821 26239170 ~ 26241244 (+) True G14704
AMCG00016586 mRNA upstream 113052 25553480 ~ 25559207 (+) True AMCG00016586
AMCG00016587 mRNA upstream 130214 25534049 ~ 25542045 (+) True AMCG00016587
AMCG00016588 mRNA upstream 152094 25515479 ~ 25520165 (+) True AMCG00016588
AMCG00016585 mRNA upstream 263353 25407227 ~ 25408906 (+) True AMCG00016585
AMCG00016584 mRNA upstream 267419 25385070 ~ 25404840 (+) True AMCG00016584
AMCG00016598 mRNA downstream 46904 25725253 ~ 25758926 (+) True AMCG00016598
AMCG00016603 mRNA downstream 200997 25879346 ~ 25887229 (+) True AMCG00016603
AMCG00016606 mRNA downstream 227775 25906124 ~ 25918145 (+) True AMCG00016606
AMCG00016604 mRNA downstream 251228 25929577 ~ 25933057 (+) True AMCG00016604
AMCG00016607 mRNA downstream 269711 25948060 ~ 25948410 (+) False AMCG00016607
TU17920 other upstream 280419 25370296 ~ 25391840 (+) False AMCG00016584
TU17809 other upstream 514798 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other upstream 514798 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other upstream 514798 25150483 ~ 25157461 (+) True AMCG00016566
TU17806 other upstream 538380 25133198 ~ 25133879 (+) True G14361
TU18026 other downstream 47499 25725848 ~ 25740558 (+) False AMCG00016598
TU18062 other downstream 262179 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other downstream 262179 25940528 ~ 25950176 (+) False AMCG00016607
TU18257 other downstream 607514 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 748990 26427339 ~ 26432356 (+) True AMCG00016633

Expression Profile