RNA id: TU18019


Basic Information

Item Value
RNA id TU18019
length 2834
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G14517
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25672304 ~ 25675200 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttatgtatctgtctgttttattgtttttgctatTATCCATTTGTTACTGATTTAATAGCATCTTTGTGCACCATGTGTCTTCCAAGTTGGGAGGTGGTAGAAAAGAGCAGAATTCAGACAGCAGTGAGAAGTGAGGGGAGTTGAATCTCCTTGTAAGATTTTAACATTCATACACCGTGgaataaaggaaattaattgtAAGGCATAGTGCAATCATGAGACCGGAAACACAGAGACGGGCATGATCAAGTGTGATACAAACTAGCGACAATCATGTGAGAGCAAATGAAGTGTACTGGAATATCTAGGAGAGTAAACTGTGACAATACTGTGAACACTCACCATGGGAAACACGCATCTGGGACTGTAACCCGAGGGAGGCTTGTATTGGTCTTTCTAGCGGTCTCtccatttcctttcctttatgCAGTTTTTCTACattgctttctctctttcccaTGGAGAGTGACTGAGAGTCCGGACAGGTCTCTGTAGCCTCACACGCGGACAGTGTTGGCCTCGTCTGATTTGCACAACAGGCTACACTACTGGAACAAGAAACTGACATGTTTTTTGCCAACTAgtttacctttttctttttttgaatcATCGTTATGTTTCCATTGCGAACTGTAGTTGTTGCAGCTCTCTGTATAGACCCACCTGTTAATAACCTGTAAACAAAGGTTGGTTACGTTTTAGCAAATACACGAGCCAGTTACATAACTGAGACACAAGCTGTAAGATCTGTCAGATCTACATGACCAGGGCTGCCTATCAGTGTCCTAAAGCCATGATCTCAGAGAGGAAGTTTTATAAAATTGACTGAACCATTTAGCTACATGAAAGACTTCTATCTTAAAGTAGGATAATGTTTGGTTTAAGAACTGGGCCCAAGACTCAGCTTTTAAAGGGTAGATTGACTTCAGTGCACAGGGAATGTATGTGCTTTTCTACCATCTGCACACAACATTGTGTAAAACATTCAGAACACATTCAACACTGTAGTGTGATCCACAGCGACACCAGTGGCTCTGTAGCTCTGTTGAGTATAGCTAGTACAATGGCATGATAatatccttttaaaaatattccaGTTTCATGAAGTGGGGGTGGGCAGAAAAccacctttaaaataatttcagtatttCCCCAAATTAAGCAGAATGTTTTTCTCTCTAACACTGAAAATCTGccccctttttaaaaaatacatttgtctgctgaatgaaatgaaactgtctttagttttaattattcactTGTACAGATGAGTTTTGGAAGTGGATATGGGAGTGCAGCGTTTCTGAACAATCCCCCAGGCCAGGCCAGCCCTTTTGGTGCCATGGCAGCAGATTACAGAGTGGTGCAGTGGGGGGGCAAGCCAGTGCTGGCCTTTAACCCCTTCACCGCCGGACTGCTTGCCTATGGCTGTCTTtaacttttctttattatagGTTAACCAATAAGACTCCCATTGCATAGCTATTTGGTACTTTCTAGATATTGCTCTCTGCTGGCTATGCTATAAGTCCAGACGCTGTATAGTTCAAGTGTTTTAACTTGAATACGGATGTCAAGTGTAAAAcctaatgaaaaagaaataaatttAAGTACACTTTACGTTTACTATATTCACACTCTACGTATAGGTATCTTTATAGTGTACCTAACAGTACCACTTCTTCATGAGGGGAACAATACATTGGATTTCTGATTTTTTGCCAGCAGGATAGTACTGTACAGCAGGAtttctgttttccttcattACAGACCCAGGGCAAGTTCGTACTAGACAGTCTGAAGACAGCAGAGGATTTGCTCATTTACACGCAGTTATTCCCATCTGTGTGATGAAGTAGTACTCTAGGTATATAAATGAGAGTTTTGtacaggtaaaaaaaatgtaattacctGTCAAAACCAAGCAATATGTAGATCCCTCAGGTTCTTTAATTCGAGTTGACAATAATATTTAGAATTTTTAAATACCTCTTTTTATTTCTGCTCTTTATTGTCAGTTTTCAACTCTGTCTCCTAAACTGTGAAACATTTAAGCTAGGTGGCAACAAACTTCAGATTTGATCTCCTGAAGCCTGAAGCGCAGTAGAGGAAGTGAGTCAAAACCAttattgcatttgaatttgTCCAGTCTgacctctcctctctcccttcctgtgCTAGAATAGTGACAAGAATTATACATGTAGCAAAGATGAATGAACCATAACCTCCCACCTGCCTGGATTTAACTGCCTGTCCTTCATTGTGAAGGATTGTACAGACTTGCACGACACACTTTCAATAAATAAGTCCACTGGTGTGACTGTTGCCATTTAATGAGAAAGCATTTCAATGCAAATGACTGAATGGCCTTCAAAAAacgttgttttctttcttatcataaataaataattaaaggtaAAAAGGCTCACTTGCACTGGAAGAACCCTAAAGTCAGTATGTTTGGTACCAGAAGGGGAACAGAAAAACTGGCTTTGGATAGTTATAATCCCTTAGTATTTCCATATTACAaatgtcataaaaaatataatttcctttttttattttttggtatttaCAGTTAGAGGTCTATTGTGCTATCCAATTGGCTTTGAGAGTGGTGTTGCTTCCTTTGTATGAGACTGATACCATCATGTGGATTGGATTCAGATTGAACAATGTGTGAATCCAGTGTGAAGCCAGTGTCACTCTTCACTCTGTAAAGGGTTGGGAGGGGGTTATGTTGTGGAGCTAATGATCGTGAGAATGATCATCTGTGACTATTTGAATTATAATTGctgtacatgtttttcttttttttataattaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18009 lncRNA downstream 63245 25604780 ~ 25609059 (-) True G14507
TU17998 lncRNA downstream 126579 25543046 ~ 25545725 (-) True G14496
TU17979 lncRNA downstream 152208 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA downstream 152208 25516989 ~ 25520096 (-) False G14487
TU17955 lncRNA downstream 258206 25413316 ~ 25414098 (-) False AMCG00016591
TU18107 lncRNA upstream 242830 25918030 ~ 25921548 (-) True G14578
TU18115 lncRNA upstream 296586 25971786 ~ 26022263 (-) True G14585
TU18117 lncRNA upstream 298334 25973534 ~ 25979563 (-) True G14587
TU18197 lncRNA upstream 422528 26097728 ~ 26098972 (-) True G14650
TU18219 lncRNA upstream 473105 26148305 ~ 26149084 (-) False AMCG00016617
AMCG00016597 mRNA downstream 29971 25611563 ~ 25642333 (-) True AMCG00016597
AMCG00016594 mRNA downstream 188594 25449909 ~ 25483710 (-) True AMCG00016594
AMCG00016596 mRNA downstream 222552 25439336 ~ 25449752 (-) True AMCG00016596
AMCG00016595 mRNA downstream 233529 25433834 ~ 25438775 (-) True AMCG00016595
AMCG00016590 mRNA downstream 248645 25421283 ~ 25423659 (-) True AMCG00016590
AMCG00016600 mRNA upstream 1369 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016599 mRNA upstream 30881 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016601 mRNA upstream 149546 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016614 mRNA upstream 429716 26104916 ~ 26117450 (-) True AMCG00016614
AMCG00016617 mRNA upstream 472310 26147510 ~ 26149543 (-) True AMCG00016617
TU17858 other downstream 394826 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 588605 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 656961 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 660526 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 790206 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 77795 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 406303 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 481321 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 506544 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 506544 26181744 ~ 26184778 (-) True G14676

Expression Profile