RNA id: TU18038


Basic Information

Item Value
RNA id TU18038
length 1457
RNA type TUCP
GC content 0.41
exon number 2
gene id G14534
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25752995 ~ 25754472 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGACCCTAGTAATGCTGTCTGAATTTCTCAGATTATGCTCTGTAGCATAATCATATTATGCATATTCCTTATATGAAGACAGGGTATCCctttcattttaagaaaaagggaaaataattgtaaacatTTGGTGCATCTGGATACAGCCCTGAAAGTAAGTCTGGTTTCAtaactataaatacattgcagaaTTAAACCCTCAGTGAACCATGACAACTTAGAAGTTCAAAATATggtatatgtaatatttaaaggaaaataatgtgaaattcTTACCTTATTTTGACTGATATTATACAGCAGTTTATTGTGagtatgtgaaatgtaaaaaaatgaagacatgCATGTGAAATCTAAggttcaaaacatttatttggatttataatttattatacttTCTTCATAAAAGCtgacattacaaaatgttttttaaaagcaatgttttatgGAAAAAGATTGCCAACAGTATCCCTGTAGAGTGACAGAAACTGAAGTTTCAGCAGTTTGTGAGAGGTGCATGTTATGACCTTATCATTATCCTTTTATGATATTTCCTTGACTATATTTACATCACTGAAAGCAGAGTGTACAGAAGTATAGTACAGAGACTCAGTGTGTTCCCATACAGTGAAGAGATGTGCTGAAGCAGCCTTGTGTAGTAACTTATAGATCACGAATGTGGGACTCATTTTATACATGGGAGGCTTCTACAATCTGTACAGTCTGAGTTCTCCACTGGGGGAAGTTTAAAGAGTGCAGCTAGCAGCACACTGACAACCTAGTCCAGAgtaacaaatcaaaacaaaaaaatacaccattacaaaaaaacaacaacaacgttttggtttgaaaagaaactgaaaaaatatacaaaaaatgatGAGAAGGATTTCTATTCATCATCATGAACAGCTAATGGTTGGCAGAGAGCTTTCTGAGgttttccccccacccccagccctgCAGACTAGCAGAGCCCCAGTGTGTCGTGCCCCTAGAGACTGAACACAGACTTGCCCTTGCGGTCGTTGGCGCTGTTTGAGAGCGGCTCCTCTGACTGGACCCCGTTACTCTCGTCTGCTTGCTCCGCCCCTTCCTGGGGTTTGATGAGCTGGCCCAGCAGCAGGGCCAGCAGGTTGGGCAGGTCTGCCACTGGTGCTGGTTCCGGGGGCTCCGGATGGGTGGAGACAGGCTGGGCGCTGGCCGTAGGCTCCCCCCCTTtgtcctgctcctcctcctcttgttGGCGCTGCTTGTGGTGCTCCCTCTGCTGGTTCGAGGCCTCTGTGAGCGCAGACAGAGACTGGGTGAGGGCCTCCAGCTGTTGCTGCGTCTCAGGGTTGGAGGAGACATTGAGCAGCTGGGCCATCTGGGGCAAACTTagatctgtctgtctctgcagcaGGTTCAGCAACACAGCCATCTCACTCTGATTGAGCTGCTCGGTGGCCTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18019 lncRNA downstream 77795 25672304 ~ 25675200 (-) True G14517
TU18009 lncRNA downstream 143936 25604780 ~ 25609059 (-) True G14507
TU17998 lncRNA downstream 207270 25543046 ~ 25545725 (-) True G14496
TU17979 lncRNA downstream 232899 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA downstream 232899 25516989 ~ 25520096 (-) False G14487
TU18107 lncRNA upstream 163558 25918030 ~ 25921548 (-) True G14578
TU18115 lncRNA upstream 217314 25971786 ~ 26022263 (-) True G14585
TU18117 lncRNA upstream 219062 25973534 ~ 25979563 (-) True G14587
TU18197 lncRNA upstream 343256 26097728 ~ 26098972 (-) True G14650
TU18219 lncRNA upstream 393833 26148305 ~ 26149084 (-) False AMCG00016617
AMCG00016599 mRNA downstream 26448 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016600 mRNA downstream 49668 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016597 mRNA downstream 110662 25611563 ~ 25642333 (-) True AMCG00016597
AMCG00016594 mRNA downstream 269285 25449909 ~ 25483710 (-) True AMCG00016594
AMCG00016596 mRNA downstream 303243 25439336 ~ 25449752 (-) True AMCG00016596
AMCG00016601 mRNA upstream 70274 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016614 mRNA upstream 350444 26104916 ~ 26117450 (-) True AMCG00016614
AMCG00016617 mRNA upstream 393038 26147510 ~ 26149543 (-) True AMCG00016617
AMCG00016615 mRNA upstream 397139 26151611 ~ 26155450 (-) True AMCG00016615
AMCG00016616 mRNA upstream 404554 26159026 ~ 26159922 (-) False AMCG00016616
TU17858 other downstream 475517 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 669296 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 737652 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 741217 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 870897 24881148 ~ 24882098 (-) True G14305
TU18183 other upstream 327031 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 402049 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 427272 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 427272 26181744 ~ 26184778 (-) True G14676
TU18278 other upstream 484610 26239082 ~ 26241106 (-) False AMCG00016623

Expression Profile