RNA id: TU18082


Basic Information

Item Value
RNA id TU18082
length 1608
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G14556
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25933951 ~ 25935581 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcatactacacactacacacacacacacacactacacacactctcacactacacactacacagacTACACAACATTCTAGGGCTTTTACTCATTAGAGTTCATAATACACCAGTATTGTAATATACTACACAGTAGTAGCTGTATTATTGTCATGGTTTCTAGAGTATGGAAATCTAAAAATGTCTCAGCCATCAATGCACAGATAATGATAAGTCTTATTATGATTGCCTGAGGGTCAATGCACAGCTGCCTGAGCACAGGTGGGGTTAGGCAGGTTCAAAGCCCCCGGGGAATCTGCTGCTTGCTACACAACAGGGACTGGTTACCTAGCACCTGTGTGCGCAGTGCTATATATAAGAGCTGCCTAAGTCATCTCTGTATTGCCCCCCTAGCTCTGAGTGCAATGTAGGCCTCACATTATGAAACATTTCAAGCATTTGTGAAAAGgcaattgtactgtatttactaTGTTAGTACAAGGGATAGAGTTGAATAACAGTCAGCAAATGTTATTTGGGATGATCTAAAACTAAATTCTTCCATTCCAAATTAGAATTCAGAATAATGAGCCATAatgaattatacaattaattcaACTGTGGGAAGAAATGATCATAATCGGAAGCAAAACTGAATATCCTGTGTCGGCCCATATCATTTCATTCTGTTTCTCCTCCTCACTGCCTAAAGCAATCATTCCAACCCAGAGGCCCTGATCAGTGATTTAGACTGGAATGGGACAGATTGTTGTTTCAGACTGTTCTAAAGACCAGTGACCTCTAGTGTTGAGAACTAATCTGAATTTGCaaaagctttgttttcttcctgttttcttaAAGTTACGGCTCAAGTTTTAAGGTACCTACCCAGTTAGGACAAATAAAAGTGAGgcaaaagagaaatgaaaataaatgaatgcctTTATCACTTAAATGGCCAGAGTGTATCTAAACATTGAGGGTGGGTCACATTTTGCACTGAAGCCGAAGCAGACATTCATACAAATTGTAGAATAATTGGACACCGTGACCATTTATGTGAACCAGTGTGAGTATAAAGGATAGTGAGAATCGTGGAGATTGGTGACTTATGTTTGTAAGCACTGGGTGTAGTAAGGAAATCTCAACCACCAATTTCTTGAAATTACTTACTCATTACTTTCTTACTTTGTCTCTGTATCCTGTGCACACAATCTGGAAATTCAGATCActgttttgaagcatttgcaGGTATGCATGTCAGTTATCCCCTGGAGGATATCTGTCAAAGTAGAGAGGACTTTGGGTACATATTACTGTACACCAGAGTAAAGtacttttttgttagtttgtcttgtttttacattaactAATCAAATTTGAGagatctgcaattcaatttaagatatcttaaattgtatttcctgatatctctaaatgaaagTTTGGCTTACCGTAGATCCATGGCAAACAAGGTCTGTGCTTATTAGCAGGCACAGATACCCATTATCCAACTTATCATCAACACTATATCCCATTCACTGGCAGATGGATGCATGTATCTCCAGTACTGATGAATGCTGCCATTTCCCTCATACACATATAAACCTgcaatgtatatgttttgta

Function

GO: NA

KEGG:

id description
ko05206 MicroRNAs in cancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18012 lncRNA upstream 255602 25672259 ~ 25678349 (+) True G14510
TU18004 lncRNA upstream 322262 25604639 ~ 25611689 (+) True G14502
TU17932 lncRNA upstream 510925 25422443 ~ 25423026 (+) True G14455
TU17917 lncRNA upstream 567575 25363896 ~ 25366376 (+) True G14448
TU17914 lncRNA upstream 573143 25360471 ~ 25360808 (+) True G14445
TU18169 lncRNA downstream 230049 26165630 ~ 26165982 (+) True G14623
TU18247 lncRNA downstream 277713 26213294 ~ 26215317 (+) True G14695
TU18260 lncRNA downstream 298745 26234326 ~ 26304342 (+) True G14703
TU18261 lncRNA downstream 303589 26239170 ~ 26241244 (+) True G14704
TU18322 lncRNA downstream 444470 26380051 ~ 26382420 (+) True G14755
AMCG00016604 mRNA upstream 894 25929577 ~ 25933057 (+) True AMCG00016604
AMCG00016606 mRNA upstream 15806 25906124 ~ 25918145 (+) True AMCG00016606
AMCG00016603 mRNA upstream 46722 25879346 ~ 25887229 (+) True AMCG00016603
AMCG00016598 mRNA upstream 175025 25725253 ~ 25758926 (+) True AMCG00016598
AMCG00016586 mRNA upstream 374744 25553480 ~ 25559207 (+) True AMCG00016586
AMCG00016607 mRNA downstream 12479 25948060 ~ 25948410 (+) False AMCG00016607
AMCG00016605 mRNA downstream 20550 25956131 ~ 25958833 (+) True AMCG00016605
AMCG00016602 mRNA downstream 25965 25961546 ~ 25973771 (+) True AMCG00016602
AMCG00016609 mRNA downstream 47376 25982957 ~ 26018921 (+) True AMCG00016609
AMCG00016608 mRNA downstream 121188 26056769 ~ 26083264 (+) True AMCG00016608
TU18026 other upstream 193393 25725848 ~ 25740558 (+) False AMCG00016598
TU17920 other upstream 542111 25370296 ~ 25391840 (+) False AMCG00016584
TU17809 other upstream 776490 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other upstream 776490 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other upstream 776490 25150483 ~ 25157461 (+) True AMCG00016566
TU18062 other downstream 4947 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other downstream 4947 25940528 ~ 25950176 (+) False AMCG00016607
TU18257 other downstream 350282 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 491758 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other downstream 493142 26428723 ~ 26429327 (+) False AMCG00016633

Expression Profile