RNA id: TU18115


Basic Information

Item Value
RNA id TU18115
length 3044
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G14585
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25971786 ~ 26022263 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGATCAAACGGTGGTGTTTTATTAACCCATTGccagacagacacagtcagCACAAACAGAAATCTGCaatcactgaaaaatatatgtacacacacacacacacatttatttatatatattaataaacacatatatatgtgcaaatatatatgtatataaaacatttttattaaaaaaattacaaaagtaaaacaataagaTTCCCATAATTAATAACCATACAACAGTGTACAATAAGTATATTATTAGTGCTTTAGAATTGAAATTTCAAGAATAGTAGTACCAAAACAAATTTAATgtacaaatatcaaatatacaAGTCTATGTTATTTCTCCCACTCTTCGTTCCATCCCTTGTTACCTCCCTCCAGATCTCCATGTTTTCAGAGGTTAAAGCAAGTGTAAAACAAGTAGTGCATGACTAGGTTTCTCTGTGGAGTTTACAAATGGCCAGTACAGGCTTGTATTCAATATCAAAATTCTCCATGGGTCCTGCCACATAAAACAAGTACCGCAGAATTTAGGAGGGTTTTCTACTTTTTCCCCATTACAATTGGCTAAGAACTTATTGTACCTGTATCATATATGACTGTCTTTTCTTGTACCATTCCACATCACATCGGACATGCACTTCAGTGTAGACGTAGACACCAGAGGCTCCAGTAATAATTTAAAGAGATGGATTTGGATGTTTCAAAGCTGACAATAATGTGTAGTAATAAGCAAGTCCAAATTTGAGCAAATTGAGTAATTTATGTAGTTTTGAtgataatgtatattataaaataattccaAATCACTTGTTTGTGGAAATTAGATCGTTCAGCAAAATAAACTAATCTTCACCAACCTTATATAAATAAGGCCTGGGTCTAAAAATTCTTACTTGAAACACTAtgatttaaattgatataattTCTTTAACtttgcttaaataaatataagcatatatatatatataactattattattgacaaatttgacaaaataaaccTAATAAATTGTTGCATCTCTGGCTCTAGTAGAAGTCACAAGGTGACTTCCTATGATGattctgatattttattaagtattattaAGTTTCAATAGCATCCAAAACAACAGATGCATCTGCCCTGCAATAGCAAATTTAGGAAAATTATGGACTCAACTTTGATTATTTGGGGATCTTACTAAGTAAGCAACATGATAAACAACCCTTTAAGTAATGGGACAGAAAACCATGTAAATCATTAAGCAAAGAGCACTTGACAAGTGCATACTGTTGCCTTGTGAATCCCAGTGAGGGGATGCAGTTCACACACAGGAACCTGCACCCCAGCAGATACACTTTCACAGATCAGTTACTACATTGTTCTGaaagatacattaaaacaaataatgactTACAGTAAATTGTGCTACAGGTCAATAATAAAGGAAGGAATCTGACTACTTTAAAACTTTACAGAGTAATTTTAGTGTTAACACACTTCTCCAAGCTTGTAAAATACAGATGCTGGTGAACCAATATTTACAAGAAATACAATGTGTAACCCTGCACAACTCTCAGGACATGACAAGGGGAGTCTGTAAATATCAAAACATATAAACAGACAACAGGTACAGTGTCAGAGAAAGCAGACAGGACCATGCAACATCCCCTACCTCCCTTCACCCCCACAATGTTTCTGCTCCACTTCTTCTTTGGTAGGATGAACTACAATATCACATTACCACACCAATAAACTGAACATAAATTCTATGGCTGAAGTCCCTAATCCCACAATCTGTCAATGAAGACTGTATTCACTTTAAGAAAGCTTATGTCAAACACTTTACACCATTAAATATGTAgaatgtttttcacaaatttagAGTCTAGTTACTTTCCCCTTCATTTTATACCTGACTTGATCTCCCTAGATCACTTCACCAGTTAATTCAAGTTAATGAGGGCTTTGGTCACTTTGGTCAGTTTCTTTTAATATtctgtaatgaaaacaaaggatTGATTGATCCTCAGAGACTACAGGAATAAGATGCTGTACCCAGCGATCCAtacgtttgttttgttcaaatgtaCGATGTGAGAAATGGCTGGTTATTTTACCATGCATATTGACCAGCATCAACTTGTTATCGGTATTAGAAACTGATCCGAATTTCATACTGAATTTGTCATGCCCCAAGCTTTTCAGTGACACCAAGTGGGAatgcagtaataaaatacagatctattgttctttttttagaaAAAGAAGCACATTTAGATCAAGAATCATACACTGAGGTGCTTTCTCTGGATATCAGCACAGGCTGATACACAACAGCAACATGGcatcaacacacagcacactacCATACAGGGTCATCTAAGAGGGGGGAAAAGGCAGGAGAGGGATTGCCAGTGAGGATTTATGGAATTTACTAAGGGCAACCATAGCATCTGATGACTAATAACCTACATTATCATTTGGGATTAAAATTTTTGGCTGTTTGTTAATGCCCGCCAAAATTAAGTTTGGACTGTGGACTAAGTTACTCAACTCTTGCTGCAGAACATTTTACCACACCATACTTATAAAGCATGCCCTTTCCTTGCAAATCCCACCACCACTGTTTTAGAAAGGGGAATAACAGTCTGCCAATATTTCACCATGATATTTTCTTGTTAGAAAGAAAGCAGATGTGCatctgtgtcagtgttttatGAATGTTATCCAATGATAATGACCTGTGTAGAATCAACCCAACGACGTTATTGGTTCAGCTCAGACAGGATTGAGGTTCAGTAGTCTGGATCTTTTGATTCTCTGAGCTCACAGTAAAACCTGAAACAAAGCAGATATTTCCTGCTTGCTTGATAGTCCAGTCTTCCCAGTCCACAATGGAGGCCTTCCGTGGATCAGACTATACTGCATTTGGCCTCTCACAGTTTGAGTCTTCGTACCATAGCCGAGGTGACACTCTGGATGGGCACAGCTCTTATGCTGGATTGAAGCTGGAGTCTCTTGGCTCCCCCCAATACCCAAAGAGCAATGCCATTGTGCTCGACAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18107 lncRNA downstream 50238 25918030 ~ 25921548 (-) True G14578
TU18019 lncRNA downstream 296586 25672304 ~ 25675200 (-) True G14517
TU18009 lncRNA downstream 362727 25604780 ~ 25609059 (-) True G14507
TU17998 lncRNA downstream 426061 25543046 ~ 25545725 (-) True G14496
TU17979 lncRNA downstream 451690 25516989 ~ 25520096 (-) True G14487
TU18197 lncRNA upstream 75465 26097728 ~ 26098972 (-) True G14650
TU18219 lncRNA upstream 126042 26148305 ~ 26149084 (-) False AMCG00016617
TU18227 lncRNA upstream 159481 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA upstream 159481 26181744 ~ 26184778 (-) False G14676
TU18283 lncRNA upstream 252914 26275177 ~ 26303459 (-) True G14723
AMCG00016601 mRNA downstream 145940 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016599 mRNA downstream 245239 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016600 mRNA downstream 268459 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016597 mRNA downstream 329453 25611563 ~ 25642333 (-) True AMCG00016597
AMCG00016594 mRNA downstream 488076 25449909 ~ 25483710 (-) True AMCG00016594
AMCG00016614 mRNA upstream 82653 26104916 ~ 26117450 (-) True AMCG00016614
AMCG00016617 mRNA upstream 125247 26147510 ~ 26149543 (-) True AMCG00016617
AMCG00016615 mRNA upstream 129348 26151611 ~ 26155450 (-) True AMCG00016615
AMCG00016616 mRNA upstream 136763 26159026 ~ 26159922 (-) False AMCG00016616
AMCG00016624 mRNA upstream 190123 26212386 ~ 26215060 (-) True AMCG00016624
TU18038 other downstream 217314 25752995 ~ 25754472 (-) True G14534
TU17858 other downstream 694308 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 888087 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 956443 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 960008 25011341 ~ 25011778 (-) False AMCG00016562
TU18183 other upstream 59240 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 134258 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 159481 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 159481 26181744 ~ 26184778 (-) True G14676
TU18278 other upstream 216819 26239082 ~ 26241106 (-) False AMCG00016623

Expression Profile