RNA id: TU18117


Basic Information

Item Value
RNA id TU18117
length 5932
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G14587
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25973534 ~ 25979563 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatttttcaatttaatttagagTTGGTTCTGATTTTGAAGCTCTTTTCAATACAACCACTGGATATACACAGGTTATTCATTCGCAAagaataaaattataatatgcaATGTGGCAGGAAGGGAGCACCACTGAGCATCAGGTCCCTGGCATGCTGGCCAGATGGGGAGGGTCTGTAGCAGGGTGCCCAACTCTGGTCCCGGAAAGCCACACTTCTGTTAATTTCTTAAGTGACTTATTTAGCTTAATTAGTCTAAATGACCATGTGTTCAAGGTATTCAGTGATTTATGATCTAAAGAGACATATAAGGATTGTGGATCTCCAGAAACAGCGTTGCCCCACCATGGGGCCTCTATAAAGGCCCTATAGGAGAATCCACCTGCTGTTTAAGGTATAAAGCCACAGATGAATTATGGAAGTTGACACACGGCTTGCAGGAAATAAGGAAACCTCAGATCCACACTGTCTGAATGGAAAGTCTTTGTGTCCCTCGTCAGTCAGTCTGACATTCCACCACCCTGCCCCTAGACCCCCAACCCCTGACCCTCTCTTTGTCTCACCCTCTTTATCTCAGGCTCTCAGAGCTGCTATATTTACCCTCACTCTACCACACTCCATCCTAGCTGATCCACTCATGTCCTCACACATACAGCACACAAAGCCCCTGGAGTTAGACATGCAGACTCACACAGACACCATGGGAATTTGTTACAGTCGAGCCCTGTGTCTCTGACAGTGTTCCTACTTAGAAACAGACTGTTGCTCTCACAGGCACAATCCCAAGCtctattcctttttcttttctctctgcaaAACAGTCAACCTAGCtggcactctcacacacacaatctctgcAGCACCACCTGACACACAACCCCAAAGACACACTGAACCTCATATTACAGCTGCACAAAATCAATACTTTCTCATAAAGTCACAGataagaaatgtgaaatattactTTTAGCTGAAACTGTATCACACaagaataacaacaagaaacaaaaccaaaaacaatgttAAGCATGACTTTTCTCACTCTCCAGATGAATGCTGTTGATTTCTACAGTCTTAGTAGCCTGTTCTTTATGGTTTCAGTGTTAATCCTCTCAGGCAATATTATTCTAATTCCCCTAGCAGAAAACATCAGCGCAATAACTGTACAATCACGCACTGTAACGCCAGacatttacacatacatacaaaaggcaaacaatctCAAAGGCACCAGATTTGGggcaattaaaaacagattggaTATTGTCTGGATATTATTCAGTATTCACCCAAGATTATTTTGGCACACAAATTGGTCATAATCACCTTACTAAATGGTCCAGGCATCAGTTTTGCCCTCACACCCTTCATTTCTGACCTTTACGAGTTTACAGACTTAGAAATTAACTGGACATTCTTCCAGAGTTCCAGGACACATGGGAATACCGATATCAGATATCAGGTGGAGCTGACtaaaacagaacatttattgcaacatttatttattggaacCACAGAAATGTCTATTACATCATATTTACCTTGTGAATTGCTTACACAGACTTTGACACCTGCTAACTGTTATCAGTTTAGCTGGGGGAGGGGTCACTATCTGTGTTAcctatgtttaatttattaactaattaatgTCGATTCTTAAACTAACATTTGCCTTGTACCATTATATTCCATGAAACTGACAAATGAGACCTGTTTTTCAGATATGTGCCTTTAAGCTACATGTTCTAATctggcacacaaaaaaaatctttaaaccCCTTCACCGCAAAGGTTTTTGCTTCCAgcgaaagcaaaacaaatggtaACTTGCTTAACAGCCTGGTGTGATGAATAATTAATAGATTTAATCTaccaaaacaaaagtttaaaaggCTTGTTTTAGTTGTGTGATTTCTCACTAAAACATACTCATCCACACGGCATATCCACAGGCACAAAGATACCTCCTTGTGATTAGGCGGTAAGTATGAAGTAAAACAGGCCAGGTAAAAGTGATGCTGAGTAAaaagatggaggaggagggccTCTGTGGGATAGCAAAAGCAGTTTCCCAATTGAACTATGCTGACCTGCATTAATAATCAGACCATTTCTTCTGAACTCACAACGCTGTAACTCCATAAACGATCTTATGGATCTTACGGGAGCTGTCTGTAAATCAAACCACTGTGGGACCACTTAGAAACATCCTTGCCTCTGCCTACTTCAAGTTGGCATTGAGTAGGGTGACCAAATTACTCCATAATCCCTGGGCTACTTTAGGACAAGATTGTGATGTTAATATTTCcttgaaacataaataaatgaacatgtaAAGTTAGAACATTCATCCATTTACATCAAGTTATTCTAATTTGATTGGAATAGATCTAGAAAGGACTTTTAGGTGCCAAGTATGCCAAATTCTTAATTGTGCTCTGGTAGTTGccaatgtgcatgtttttttctgatcacTTTAGAATCACTGATCAGCACTTGATTCGGTCTGGTTGGTCCCAGGAAGATTGAAAAAGTTTTTGGTGTACAccatttatcatttaaaatcagTATTTTTCTGGTCAAATCTGTAATAATTTGGGAGTTCATTTCATTCAGTTTTGGTGAAAGCTCCACGTGTCTATGGGATTATATAGTAATATGGTCATCCTAGTCTGAGTGAAGGAGCATTAGACTAATACAATCCCAGTCCATATGCGGACCGATTGTAGTCGCTGGGTCTCTAGGAAGAAACACAGACATGCAGCGTTAGCAGACAGATCATACGACTGACACAAACCCTTTGGGATCAGGTAGTTTGGTTACGTATTGCAAATAATGGTGAAAGTGGATTTTTTGAGCACTGGTGAAAAAGGTTTGTACAGCAGAACAATGAGCAAACTATAATCTCAACAGCGTAGGAGGACATTTTAATAAGGTCatcaaatatatgtaatatccattcaattaaacaattatactaCAGCAATGAAAAGGCATCTCTTCCTCTGTGGACAGTGTACCTTCAAGGCAACATTGGGACAGGAGTGTGGATCTGAGGCCTCAAGTGGAAACCAGGGTGAAGTTCGGCTCACTATTAGATGGCAGCCaatttaagaaaacagaaaccTCCTCCATCCGGGCCTGCTGAGCAATATTGTGCGTGCATGCACACATTGGCACACAGATCACCTCAGCCCCCTACCTAGCTCCTGAACAGCAAGACAccgacacacacatacacgggtgctgccacacacacagacacaccccaGAACAACTGCAAGCACATGGTTTCTgtacagacacgcacacacacacacatacacagcacaCTCTGCAAGAACAATGGGGTCTTCTGGTCCGAGACCCCCTTCACAGCCCCTTCCAGTCCCCGCTAAAATAAAGGCAGTCCAGGTGAATGAGAATAATCCATTTGGTCAAccaccctccccacccccaccccctaaaAAAATCATAACACACCGATTAATATGGATAGAAATAGGTCTCCCATGGCACAGCAGTTccgttgcatttatttttattttcatgacacCCGTTTCATGTGTTTTCATGTCAGTGCTATCATGTGAATTGCTCTGATGATGAAGAGCAAATATTTCAACTCCACTTTTATGAAAACTATCTTCAAAAGAGATCGCAAAACTTCAAGGTTCCACCATCGGTGTTTGTGTAAATACAGGACCCCACAGCCCATAACACATTAACCAACCGAAGCTACTGTGTAGCCCGAGACCGATTTCCAACCTCACGTAAGGAAAGCAGTGTTAATCAATATCAGAACAATAATCATGAGAAAAGAAGCAGCAACGAAATTCATAGCAGGCAAAACATCTCAAAAGGAGGACAACAGAGACTCAAGTCACCCATCCAAAAGAGCCCTCTTGTTTCTTCCTACTCAAAGGCACGTCAGTCCCTACTGCAGGACAGGATCTCAATCTGATATTGGACTTTGAAGGTTTCATATACACTCATCAATAGAATATGAAATAGTAacttactttatatataaacattacaaattctatAGTGGAGTGTCAAACTCCAGTCCTGTCCTGAGTCCTGAGTGGACACACTGTCTcttgatgtattttcttccaacaggagctctcaattactcagttttctttttctgagaCTTATGTaagattttcacatttaatttcagctgatcacttaaattatgtttattactCAAGATATGGCATCCTCACAGTATTTTTGAGTTTGGAGACAAGAGCCTCCAGGACCGCAGATACCCCTTTTATAgatctttacaaatattttttttaagaactgaCAATAATTTAATGACATGTAAGCAAACAAATGATCAGTTCAGTTAAGGGTTTAATTTGATAATTAAGCTTGATGATGCTGATTGCACAGGAGACAGTGCTGAAGGTCTCTGGCTCAGTGCTGGACTGCAGAGAAGGACACAGTGGAGAAGGCCACCCTCTACTGGCAGCATTGCACAACTGCATTTCAGTGTCCCTTAAAGACAGATCGTGGGAAGCTACAATCCAGTGGGTTTCACATGTCCTTTCATTATCTTTACAAGACTTGGAGCAATTTCATTTTGATCAGATAAACAGGCAATTTAATTCATTAAGTAATTCACAAATGACATGGACTGAAAATCTAACTCCCTGTCTGCAGGCTTCCATGATCATATATAGCCACTCCAGGCCTTTAAGATTTAACAATTGCCTTCCaagttatataaaaatcataCGAGTCATTTAGAGTACATTATAAGTTAACTATAAAACCTGTTGACTCTCTAGGACTAAGGATGGCTGCCCCTCAGTGTAAGCTGAAATAATCACATAACAATAAAACTACTCTTcggtcaaagaaaaaaaaaaaaaagaacattgcaGTACAGTGCATGTTCTATTTCATTGATAGggccagccaatcacagtgcaCCTCATAAGTGAGGTCATTGGCAAAGTACTTTGTAATACATCACATGACCATATTTAGTCAATGGAGCTCCTCACAGTGCAGGAAAGATTCTGACAATTTGAAAGGGGTTAAGGCAAGACACAGCCCAGGTCCAACCATTGACAAATCCGTCTCGGTGTAAACCCAGTCTACAACTGTCTCAGTGGCTGTACCCCCGTCTCCTACACTTGTGCTAATTGAAACGTCATCTCTAAGCGCTTGCACATTTTGAACCTCCTCTCTCACTGTGTTCAATTCCAGAGCTTCTGCAGTACTGACTCACTGACAGGCAACTGTAAACATAAGaagcacttaaaataaaagcattgaaCAGAAAagagctattattattataactgggAAGGGGACAGGAAGTTTCAGAGCGGATCTCTTCTTCGACTCGCAGTAGCCTCAACACCGGAGCCTCTTCCAACGCAGGATCCTGCACAGTATCACTCAGAACCCGCCTTGTACGCCAAACTACCAGGGCACCTAATAACCTTTAACTCGTATAACTTAAACATCAAACTGTTATGTAACGAGAGGCCTGATCTACTGGTTTCTCTGTACTGTAAATCCCCAGCTGAACTGTGCTAAACACTGGCTGACTAGGTCTCTGTTGTTCTCTTCAAGGCAAAGCTCAGTGAATGCAAATAAGATCAAAGACAAAAAGTGTGATGATGCAGATCATtgcccaccccctcccctcccctccccgcCCCTTCACACccacaaaacataacaatacaaaaagtaaaaggtAGAATTCGGCAACAAAACTCAATTCAAGCAGGAAAAAGTGCAGTTCCTGGGGAGACTGATCCCCACCAACTTCTGAGAGCTACTGCGACCCCTGATTGGAGGGCTCCCCAGGAAGCGGTGGGCAAAGTGGCGTAGTCTCTCCTACTCCAGCTTAACCCCAGCCTTCTCTGTGTTGAGAAGGTGCAGACTGTCATCAATCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18107 lncRNA downstream 51986 25918030 ~ 25921548 (-) True G14578
TU18019 lncRNA downstream 298334 25672304 ~ 25675200 (-) True G14517
TU18009 lncRNA downstream 364475 25604780 ~ 25609059 (-) True G14507
TU17998 lncRNA downstream 427809 25543046 ~ 25545725 (-) True G14496
TU17984 lncRNA downstream 453438 25516989 ~ 25520096 (-) False G14487
TU18197 lncRNA upstream 118165 26097728 ~ 26098972 (-) True G14650
TU18219 lncRNA upstream 168742 26148305 ~ 26149084 (-) False AMCG00016617
TU18227 lncRNA upstream 202181 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA upstream 202181 26181744 ~ 26184778 (-) False G14676
TU18283 lncRNA upstream 295614 26275177 ~ 26303459 (-) True G14723
AMCG00016601 mRNA downstream 147688 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016599 mRNA downstream 246987 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016600 mRNA downstream 270207 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016597 mRNA downstream 331201 25611563 ~ 25642333 (-) True AMCG00016597
AMCG00016594 mRNA downstream 489824 25449909 ~ 25483710 (-) True AMCG00016594
AMCG00016614 mRNA upstream 125353 26104916 ~ 26117450 (-) True AMCG00016614
AMCG00016617 mRNA upstream 167947 26147510 ~ 26149543 (-) True AMCG00016617
AMCG00016615 mRNA upstream 172048 26151611 ~ 26155450 (-) True AMCG00016615
AMCG00016616 mRNA upstream 179463 26159026 ~ 26159922 (-) False AMCG00016616
AMCG00016624 mRNA upstream 232823 26212386 ~ 26215060 (-) True AMCG00016624
TU18038 other downstream 219062 25752995 ~ 25754472 (-) True G14534
TU17858 other downstream 696056 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 889835 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 958191 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 961756 25011341 ~ 25011778 (-) False AMCG00016562
TU18183 other upstream 101940 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 176958 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 202181 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 202181 26181744 ~ 26184778 (-) True G14676
TU18278 other upstream 259519 26239082 ~ 26241106 (-) False AMCG00016623

Expression Profile