RNA id: TU18226


Basic Information

Item Value
RNA id TU18226
length 2956
RNA type TUCP
GC content 0.51
exon number 2
gene id G14676
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26181744 ~ 26184778 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACATTTTGGCCAGAACCAGTTTTATTGGGTTTGTACAAACagggcagggtgggggggtcaggCAATGCTGCCCGCATTGGAGGCAATCCTGGGCCAGAGGTCCGCACACTCCTTAGCCACAGGACCCGTGATGGCcgagcctgagagagagagggggagagagttcATTATGTGGAACACAAAGGTCTGCTGCAGCTTCAGGCACACGTCAACGATCCTGAGAAACATGTATAAACTAATATACGCCTGTCTGAACCGTGCCCTACAATGTACAGTTATCACTGCGGCGCTCCCTGCATTTGCATGAGTTACTGTAACCGTGTAAAAACTTGCACCCATACACCAGCACTCATGTGGCGTTGTGTATAATGCACCACATACGGACTAAACAGCATTCAGATTCTGGTAAACCCAAtagttatatatacaaaaataaaactaatttgatCTGATGCCTTTCAGGACATGATTCTAACAGCCACAATCACATTCTCTTTGGGGGGGTTAAATCAAGTACAATCACACGACTGCAGCTCCAGCAGACCGCAGGCCAGCACTACACACAGGGGCAGCGCAGGGCGGCAGTGTCGCACCGCGGATTGAGAATGTACAGCACATGTTGCCGCCTCCTCACCCAACAGCGATGCGCTTCATGTGCCCTTCCACGACAACTCACCGAGCCACTGATCACAGGCGAAGCAAGTGCTTTTTAGaagggggggggcgggggtgtaCATGATTGCAGTTCAGACTCACCTTTCATCTCCCCTTTGTTGTTGACTATAACCCCTGCGTTGTCTTCGAAGTACAGGAACACCCCGTCTTTCCTCCGGTAGGATTTCCGCTGCCGTATCACTACCGCAGGATGCACCCTTTTTCCGGAGTTCTGGCTTGCCTTTCTTCACAGTGGCCATCACCATGTCCCCCACACCTGCCGCCGGCAGCCTGTTCAGACGGCCCTTGATGCCCTTCACGGAGATGATGTACAGGTTCTTTGcacctgagagggagagagaggccgTCAGGGACAGAGTGAAGACTGATCCCCGCAGGCAGTCTGACCCAGGCCTGCAACAGGATTTACACAACTAAGTCATTTCATTCACGCGTTTCAATGTAAGCAACAGCTACAATATTGgtcttttccttttattataaCCTGGGAGAATTGCATGTGAATCTTAAAGGATACACAGACAAAACTGgatcttaaaacaaaatcccaaagGTCCTGGGGTAGAGCATTGTTAAAGCTCCGGGGCATGCAGACGGAACAAGCCCCGGCCTGCACCTCCGCCAGCGACCCACTGAGGTCAGCACTACACACAGGGGCAGCGCAGGGCGGCAGTGTCGCACCGCGGATTGAGAATGTACAGCACATGTTGCCGCCTCCTCACCCAACAGCGATGCGCTTCATGTGCCCTTCCACGACAACTCACCGAGCCACTGATCACAGGCGAAGCAAGTGCTTTTTAGAAGGGGGAGATCACAACAAGGGGACCAGACTGCCACTACACTGCAGCTGCATTATTTTCAGATGGCAGGAGATTATAGGAGCACTTGGTGGCTCCAAGAGAGTCCTGAAAGGTCTCGCGTGACTACAAGTGTGACACCAAGACCCCTCTCTGATACAATATCAGcccggggaggggggggttgcTCACCTGTGTTGTCAGCGCAGTTGATCACAGCCCCCACTGGGAGACCCAGTGAGATGCGAAACTTCGCACCGGACGAACCACCACGTCCTGTagagaaaagggagagagatatTATTGCCAGTTCTGAGCCCAGATACCAGCTTGATTCCCACACCATGCGGTCCAGCCCGGCCCAAACAGTCACTCCACCCGGCCTACGATCCCAATATCCCATACACTCTGCTTAAGGAGAACTTCTTGACTGGAAGTTTCAGCAGCCTGCCCAAAAAGAGTATTGTGGCTGATTAGTCCTGCTCACTACCATTATTTCGTAGTAGAGGACTTACATTTGTTACCATTACCCATTAATACAGCAGAGTTAactggagtaatctaggtagtgccttgctcaagggttcAACAGCAGGTCGCCCAcatgggattgaacccacgaccctccacTCAGCAGTCCTAaccacactccacactgctgcctgtacataaatatctgaaatacataaataaacagcactCGTCTCAGCACTGTACTGGTAAAGTGCACACGCACATGCGCAATACAGGACAGCAGGGGTCATGTACAAAAACGCGTCAAGTCCTTACCTCTAAaatgcaccccccaccccgatGCACCGCAGAGCTGCTAATCGGTCCGCCCGGACCCTGAAGCAACGACACTAAACACACACTTCACTACATATCCAAACTGCACTAATTACAACAGTGTAAACAGACAGCGCCACGTTTTAACAGTGTACAATACCACTATCAAATGCTTAAACCTAAACTAGACAATCGAGGCCGGATGCAAAATGTACGGCACTAACCAAACAAGATGAAATAAACTAAGCATCCCTCGTGTTGCAGAGGCCGGAGATGTCGCGTCTATTCCCAGCTTCAGGACTCCCACTCGCAGCCCTACCTCCCGGAGACAGTACGAGCGACTACCGCCTGTCCACTCAGCACAGTAAAGACACCACAGCCGGGCCCCTGTTTTTATATGCATCGGTGGCTACTACCATTTTAACAAGCCCTCCAGCTTAGGCCACAACACCCGAGACATTCTGATATGCATTCAACATGGCGGCCCACAGACGGGACCGCTGTGCTAAAACATCATAAATCTTCGTCTGTTAGTTTTACAAATGAAATACGCAGCACCTGTGAGCGGACAGacattgttttgattaaacTCAGTGTCTGCGAGCCCCCACTGGTCCCGAGATTCGAGGATGCCGGGGGATTGTTTTCTCTCGGTGCGGACATCGCTTACCTCTCTTAGACATGTCGGTTCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18219 lncRNA downstream 32660 26148305 ~ 26149084 (-) False AMCG00016617
TU18197 lncRNA downstream 82772 26097728 ~ 26098972 (-) True G14650
TU18115 lncRNA downstream 159481 25971786 ~ 26022263 (-) True G14585
TU18117 lncRNA downstream 202181 25973534 ~ 25979563 (-) True G14587
TU18107 lncRNA downstream 260196 25918030 ~ 25921548 (-) True G14578
TU18283 lncRNA upstream 90399 26275177 ~ 26303459 (-) True G14723
TU18337 lncRNA upstream 210154 26394932 ~ 26395425 (-) True G14765
TU18347 lncRNA upstream 240254 26425032 ~ 26425250 (-) True G14775
TU18409 lncRNA upstream 242561 26427339 ~ 26518279 (-) False G14816
TU18415 lncRNA upstream 245677 26430455 ~ 26432353 (-) False G14818
AMCG00016616 mRNA downstream 21822 26159026 ~ 26159922 (-) False AMCG00016616
AMCG00016615 mRNA downstream 26294 26151611 ~ 26155450 (-) True AMCG00016615
AMCG00016617 mRNA downstream 32201 26147510 ~ 26149543 (-) True AMCG00016617
AMCG00016614 mRNA downstream 64294 26104916 ~ 26117450 (-) True AMCG00016614
AMCG00016601 mRNA downstream 355898 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016624 mRNA upstream 27608 26212386 ~ 26215060 (-) True AMCG00016624
AMCG00016623 mRNA upstream 54304 26239082 ~ 26241390 (-) True AMCG00016623
AMCG00016629 mRNA upstream 120137 26304915 ~ 26309363 (-) True AMCG00016629
AMCG00016628 mRNA upstream 154715 26339493 ~ 26343614 (-) True AMCG00016628
AMCG00016627 mRNA upstream 188241 26373019 ~ 26374602 (-) True AMCG00016627
TU18222 other downstream 22302 26156521 ~ 26159442 (-) True AMCG00016616
TU18183 other downstream 98577 26081503 ~ 26083167 (-) True G14637
TU18038 other downstream 427272 25752995 ~ 25754472 (-) True G14534
TU17858 other downstream 904266 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 1098045 25080568 ~ 25083699 (-) True G14392
TU18278 other upstream 54304 26239082 ~ 26241106 (-) False AMCG00016623
TU18405 other upstream 242561 26427339 ~ 26518279 (-) False G14816
TU18407 other upstream 242561 26427339 ~ 26520397 (-) True G14816
TU18445 other upstream 383891 26568669 ~ 26571641 (-) True G14843
TU18448 other upstream 383891 26568669 ~ 26571641 (-) False G14843

Expression Profile