RNA id: TU18247



Basic Information


Item Value
RNA id TU18247
length 1261
lncRNA type inter_gene
GC content 0.57
exon number 3
gene id G14695
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26213294 ~ 26215317 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGCGTTGTGTGGTGCCTTACCATGTCGGGCTCCCAGAGCGACTCACACATGCCGTACATCTGCTCCGAGCACGTGCCGCTCACCACAAAGTCCTCTGTCACCATGGGGCAGCCGATCAGGTCCAGAGAGCAGATGAATGGCTCCAGAGTTTTGGGGTCCAGGCCAGCGATCACTGGCTCGATGTAGTATGGCCCaaatctggagagagagagaaagaatgagtGATGTAGGAAGGAACGCAAGAAAGGAGAGGTGTGgtgagagggggacagagagagcatGAGGTAGGCAGGACTGGTCTCTCTGGGGCAACCTCGAGCACCGAAGCCTGCGGGGAGACACCCAGCTGGGCTTTTTCTTCCGCTGGGGCTGAAGCCACAGTGAGGAGGCTGGACTGGGGGCCCAGCAGCAGGCCGCTCTGGAGAGGCTGCTCCCCCGCTGCTCCCTGAGgcgagattgtgtgtgtgtgtgtgtgtgtgtgcgcgctcTCACCTGCGCTCATACAGCAGGTTTGACACCATGCTCATGAAGGTGCGAGGCTTGATCTGCCGTCCCTCCTTCAGCTCGTACAGGTTCAGACGGAACTTCAGACGCTGGGAGCTGTGGAGAGTGAAGGGGTCACACAGGGATCACAGGGCTGAGAGGGTGCCCCAGTATGTACAAGAGTGAATGCATCTGAGCGAGAGTGCCTGAGCAGAGCCGGCAGAGGGACTCACACTGTCTGCACGTCGGTGGCCAGCCCTGCCAGGCCGATGTAGAGCCGATCACCCATGGGGAAGACCTTCTGAAAGTCAGTGGTGACCATCTGCGCCTGCACCCCGAACCGCCGGTCCGCCGCGATGGCCACACAGCCTTTTCCACGCATCGCCATCACCGCTCCCCCGTTATATGACATGATCGACTTTGACTAGTTTTGTAGGTTGGCCTGGGCCTTCAGGGGGAAGAAAacgtgttttatttattccagaAGTTATTTTATTCAGGCGTAGCAACGTTAGAGAATTTCCTCAAGTCACAGCAGCCGCTCTTCGCTCAACGTACCTTCACTGAGTCTACAGTCGCGTCGTTGCTTTCGAGGGCACTGATTGGCTAGTTTGGCGGTCTAGGGGGGTGCTAACGCCCTCCTATTGGTGAAAGAGTGCAGTGGGTGGGACCTCGTATAGTTCGGTTGAGGAGCAGCGCCTCTGTAGTTTGCAGAAATTGATCAGTCACTGCCAGCCAGCGGGGAGGATTGTGGGATAGTGGAGGAGTCAGGCGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18169 lncRNA upstream 47312 26165630 ~ 26165982 (+) True G14623
TU18082 lncRNA upstream 277713 25933951 ~ 25935581 (+) True G14556
TU18012 lncRNA upstream 534945 25672259 ~ 25678349 (+) True G14510
TU18004 lncRNA upstream 601605 25604639 ~ 25611689 (+) True G14502
TU17932 lncRNA upstream 790268 25422443 ~ 25423026 (+) True G14455
TU18260 lncRNA downstream 19009 26234326 ~ 26304342 (+) True G14703
TU18261 lncRNA downstream 23853 26239170 ~ 26241244 (+) True G14704
TU18322 lncRNA downstream 164734 26380051 ~ 26382420 (+) True G14755
TU18340 lncRNA downstream 182332 26397649 ~ 26397927 (+) True G14768
TU18354 lncRNA downstream 226835 26442152 ~ 26445762 (+) True G14781
AMCG00016622 mRNA upstream 1136 26199489 ~ 26212158 (+) True AMCG00016622
AMCG00016618 mRNA upstream 14921 26194421 ~ 26198373 (+) True AMCG00016618
AMCG00016621 mRNA upstream 28434 26181399 ~ 26184860 (+) True AMCG00016621
AMCG00016610 mRNA upstream 66318 26137776 ~ 26146976 (+) True AMCG00016610
AMCG00016611 mRNA upstream 78519 26122437 ~ 26134775 (+) True AMCG00016611
AMCG00016620 mRNA downstream 17797 26233114 ~ 26237577 (+) True AMCG00016620
AMCG00016619 mRNA downstream 46415 26261732 ~ 26264293 (+) True AMCG00016619
AMCG00016625 mRNA downstream 70485 26285802 ~ 26302514 (+) True AMCG00016625
AMCG00016626 mRNA downstream 140288 26355605 ~ 26371140 (+) True AMCG00016626
AMCG00016631 mRNA downstream 196168 26411485 ~ 26416977 (+) True AMCG00016631
TU18062 other upstream 263118 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other upstream 263118 25940528 ~ 25950176 (+) False AMCG00016607
TU18026 other upstream 472736 25725848 ~ 25740558 (+) False AMCG00016598
TU17920 other upstream 821454 25370296 ~ 25391840 (+) False AMCG00016584
TU17811 other upstream 1055833 25150483 ~ 25157461 (+) True AMCG00016566
TU18257 other downstream 70546 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 212022 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other downstream 213406 26428723 ~ 26429327 (+) False AMCG00016633
TU18379 other downstream 390209 26605526 ~ 26657425 (+) False AMCG00016635
TU18699 other downstream 1330677 27545994 ~ 27547609 (+) False AMCG00016683

Expression Profile