RNA id: TU18260



Basic Information


Item Value
RNA id TU18260
length 837
lncRNA type read_through
GC content 0.43
exon number 3
gene id G14703
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26234326 ~ 26304342 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ggggggggggcgGGCCCCCCCCCCATGACANNNNNNNNNTGTTCACAAAGCCCACCGAGACCACCACAGTGCCCCCCCGAGCCACACACATGCCAGCCAGCCCCTCTGCCCGAGCACGTCGCTTCAGCAGGTAAAAACGGGATTatcatcacaaaataaatctctttGGCATagatcccccaccccccaaaaagaaaaaacacacctcCCCAACCCTCTACAAAAACACCAACAGATCGCTTTACAAAATTATTAAGTCTATGAAGAAGCTAAATAATTTCTGTGCCTGGGTTAGGATTTCCACAGCAGACTGAGCATTGTGATGCGGGGCTGCAGTGCACTATTACACCGGCCCTCCCCGTGCGCCCCAGTGCCCCCTACAACTGAGCCGgtaaaaactaacatttagtcccgtcaacaccattcgccattatcttccttctctctcccctttaaagttgaaaaaatacctcacaaatgttaaatatatgttaaaaaaaatctgaaaaatacaatattgtaattaaaaaggtTAAATCTCTGCAATTTAAAACTCAAAGCAATTATCTTTTCCCTTTCTGCGGACAGCTTGTCCccgattaaaaaacaaaaacaaaaaaaatctaaacacacacaggaagtcAACAGTACAGAAGAGTTTAAAAtgaaccaataaaaaaaaaaaaaaaaaagttaaagctTTTTCCTCTCAATAAACAAAATGGCTTAAAAACcttgaaaaactttttttcccccctctccttTTTGTAATGAAGCAATCCCTGATTGGGCCCATCAGTGCGGACGCTGGTCGGACCCCTGCTGCCCCCGtgactc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18247 lncRNA upstream 19009 26213294 ~ 26215317 (+) True G14695
TU18169 lncRNA upstream 68344 26165630 ~ 26165982 (+) True G14623
TU18082 lncRNA upstream 298745 25933951 ~ 25935581 (+) True G14556
TU18012 lncRNA upstream 555977 25672259 ~ 25678349 (+) True G14510
TU18004 lncRNA upstream 622637 25604639 ~ 25611689 (+) True G14502
TU18322 lncRNA downstream 75709 26380051 ~ 26382420 (+) True G14755
TU18340 lncRNA downstream 93307 26397649 ~ 26397927 (+) True G14768
TU18354 lncRNA downstream 137810 26442152 ~ 26445762 (+) True G14781
TU18352 lncRNA downstream 191080 26495422 ~ 26499242 (+) True AMCG00016640
TU18364 lncRNA downstream 222977 26527319 ~ 26548212 (+) True AMCG00016638
AMCG00016622 mRNA upstream 22168 26199489 ~ 26212158 (+) True AMCG00016622
AMCG00016618 mRNA upstream 35953 26194421 ~ 26198373 (+) True AMCG00016618
AMCG00016621 mRNA upstream 49466 26181399 ~ 26184860 (+) True AMCG00016621
AMCG00016610 mRNA upstream 87350 26137776 ~ 26146976 (+) True AMCG00016610
AMCG00016611 mRNA upstream 99551 26122437 ~ 26134775 (+) True AMCG00016611
AMCG00016626 mRNA downstream 51263 26355605 ~ 26371140 (+) True AMCG00016626
AMCG00016631 mRNA downstream 107143 26411485 ~ 26416977 (+) True AMCG00016631
AMCG00016633 mRNA downstream 124869 26429211 ~ 26433656 (+) False AMCG00016633
AMCG00016632 mRNA downstream 157981 26462323 ~ 26468002 (+) True AMCG00016632
AMCG00016640 mRNA downstream 185596 26489938 ~ 26497205 (+) False AMCG00016640
TU18062 other upstream 284150 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other upstream 284150 25940528 ~ 25950176 (+) False AMCG00016607
TU18026 other upstream 493768 25725848 ~ 25740558 (+) False AMCG00016598
TU17920 other upstream 842486 25370296 ~ 25391840 (+) False AMCG00016584
TU17811 other upstream 1076865 25150483 ~ 25157461 (+) True AMCG00016566
TU18348 other downstream 122997 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other downstream 124381 26428723 ~ 26429327 (+) False AMCG00016633
TU18379 other downstream 301184 26605526 ~ 26657425 (+) False AMCG00016635
TU18699 other downstream 1241652 27545994 ~ 27547609 (+) False AMCG00016683
TU18716 other downstream 1284137 27588479 ~ 27599592 (+) False AMCG00016691

Expression Profile