RNA id: TU18261


Basic Information

Item Value
RNA id TU18261
length 1965
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G14704
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26239170 ~ 26241244 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCATCAATTGACTGGTACAGCTCCGCATGTCAAAATTGCTGCAGTCCACCTggatcacacagacacacacccgaGGACAATGTGTGCTGCGCCTCGATGCTCACTGACACTGCAgtaacacacaatcacaaataataataaccaggaTTAATTTGGCAGTGCACTGATCAGGAGTAGAGGACAAGTTTGTATGTTAACAGAATTATACACCAGAACCCCCCCATCACAGTTTCTGCATCACAATGTAGTATGACATCACTGATTCTGTCATACTGTTGCCACTTGACATCACCGTTTCTATGTAGCAATGCATTACAACACCACTGCTTTAAGGTCGTGTCACAGTGACTTATCAAAGTGGTACAAATACTCTGCTGCTATGTTAGTGTGCGATCCTCTCCACCCCTCGCTGGCTGTGCGTCAGTGCTGCTGGGGCTCGGGAATCTGGGCCTGCTGCACAAAGTCCTGCTTGTGTGTGCCATCGCAGTAGGGGGCGCTGGCTGTGTGCTTGCAGCCGCACAGCCAGGCCGTGCCGTCCTTCTCCGGGGTGAAGCGCACAGGGGACAGGCCGGGCGCCATGTGCTTGTGAGCTCCGTCACAGAAGGGCTGCTTGCTGTGTCCGCAGGCACACCAGGCGTAGCGCTTCCCCGCCTGCAGCTCCTCTTTGAACGGCTTCCGGGCGGCAACCACGGGCTGCACCCTGCTGGAGCAACACTGCGCCTGCAAACAGCACCACAATCACTGCTACTATGAGGGCCACGGAGATAATGCTGGTGATTATTACtcatttatttagtatagcaccGTTTCCAACAAGTCACCACAGAGCACCTCACACAttaagagaacaaaaacaagaaatgaaaaaacacagatgctATGGTTAGTGTTATTGCTGTTTCTCtctatttgtgtttctcttaatGCGTGAGGATTTAGAGTAAGACTGAGTgggtctgtgagtgtgtgtgtttcaaaatgCGTTTCTGTCTGTTTCATTATGGGTGTGTTGTGTGAACTTCGCTCCCGTCATCTCCCTGGTCAGATGTGTAGTCTTGTGACTCAAACTGCAACAACAAAACGGTCCCCTTCTTAATGTAGAACTGAGGTAACAGCACATGGGCTGTCCCTCCTCCAATACCTCCGGGTGTCATTGTCTGGGTTCCTGGTCAGTCCCTTTCTGTGGGGCAATAATTCTATATCTGTATTGAACATTTGAAGATATTcagtataataatttaaatgtgtaatacagCAGCACACCACACGGGGGAGCACTGCGTTTTGTCCACCTCGACCGTGTCCATTCCATAATCATTCTATTGTTAGTTCgtacacacactttttattatgactccatttcttagcagatgtccttatccagaattattataatacatcacattatttgtacatacaatgaccaatttatacagctgtgttttcactggagcaatctagcTACAGTGCtttactcaagggtacaacagcagtgtcccccacctgggattgagaCCAAGACCCTCCGCTCCAGTCCAGCGCCCTGACCGCGACTCAGCCGTCAGCGCCGAGGCATACTATGCACAAATCAAGTTCCTTACAGCACACAGACTGAGCTGCACCACGGCGTAAAATGAAGTGACCTAAACATACGCAAATGCCAATGACAATCAGGGGGAAACAGCTGCCTCACGGCCGGACACTCACTCACCCGCTGCCCGAGCCGCTGCAGGGTCAGGGTCGCCGCTCCTGCGCGGCACAGTGACTTCCTAACGGCGCTCATACCTGCCGCTCACCGCCGGCGAGGGGAGACACTTACAGGCGGTGCTACAGCAGTACTGCTCCGACAGAGGCCGGCAACAGCGACCCGCACTCGGGTTCCTCTGCAGTTTAAACCCACATCGAGaacggtttgtttgtttcttcattcattAATGAATGTATCAATCCAATCTGCATGgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18247 lncRNA upstream 23853 26213294 ~ 26215317 (+) True G14695
TU18169 lncRNA upstream 73188 26165630 ~ 26165982 (+) True G14623
TU18082 lncRNA upstream 303589 25933951 ~ 25935581 (+) True G14556
TU18012 lncRNA upstream 560821 25672259 ~ 25678349 (+) True G14510
TU18004 lncRNA upstream 627481 25604639 ~ 25611689 (+) True G14502
TU18322 lncRNA downstream 138807 26380051 ~ 26382420 (+) True G14755
TU18340 lncRNA downstream 156405 26397649 ~ 26397927 (+) True G14768
TU18354 lncRNA downstream 200908 26442152 ~ 26445762 (+) True G14781
TU18352 lncRNA downstream 254178 26495422 ~ 26499242 (+) True AMCG00016640
TU18364 lncRNA downstream 286075 26527319 ~ 26548212 (+) True AMCG00016638
AMCG00016620 mRNA upstream 1593 26233114 ~ 26237577 (+) True AMCG00016620
AMCG00016622 mRNA upstream 27012 26199489 ~ 26212158 (+) True AMCG00016622
AMCG00016618 mRNA upstream 40797 26194421 ~ 26198373 (+) True AMCG00016618
AMCG00016621 mRNA upstream 54310 26181399 ~ 26184860 (+) True AMCG00016621
AMCG00016610 mRNA upstream 92194 26137776 ~ 26146976 (+) True AMCG00016610
AMCG00016619 mRNA downstream 20488 26261732 ~ 26264293 (+) True AMCG00016619
AMCG00016625 mRNA downstream 44558 26285802 ~ 26302514 (+) True AMCG00016625
AMCG00016626 mRNA downstream 114361 26355605 ~ 26371140 (+) True AMCG00016626
AMCG00016631 mRNA downstream 170241 26411485 ~ 26416977 (+) True AMCG00016631
AMCG00016633 mRNA downstream 187967 26429211 ~ 26433656 (+) False AMCG00016633
TU18062 other upstream 288994 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other upstream 288994 25940528 ~ 25950176 (+) False AMCG00016607
TU18026 other upstream 498612 25725848 ~ 25740558 (+) False AMCG00016598
TU17920 other upstream 847330 25370296 ~ 25391840 (+) False AMCG00016584
TU17811 other upstream 1081709 25150483 ~ 25157461 (+) True AMCG00016566
TU18257 other downstream 44619 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 186095 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other downstream 187479 26428723 ~ 26429327 (+) False AMCG00016633
TU18379 other downstream 364282 26605526 ~ 26657425 (+) False AMCG00016635
TU18699 other downstream 1304750 27545994 ~ 27547609 (+) False AMCG00016683

Expression Profile