RNA id: TU18337


Basic Information

Item Value
RNA id TU18337
length 494
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G14765
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26394932 ~ 26395425 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtttatttaattagtatcacacatgtctccaatcttgtaatcagtcattcagcctatttaaatggaggaaagtagtcactgtgccgtttggtatcattgtgtgcaccacactgaacatggaccagagaaagcaaaggacagagttgtctgaggagatcagaaataaaataatagataagcatggtaaaggtaaaggctacaagaccatctcaaagcagcttgatgttcctgtgacaacagctGCAAATCTTAAGacgttcaaggtccatggatctgtagccaacctccctgggtgGCCGGaagaggaaaatcaaccccagatttaacagaaggatagtgcgaatggcagaaaaagaacctagaataactgccaaagagatacaagctaaACTCCAAGCTGaaggtacatcagtttctgatTGCACCATCCATGGCTTTTTGAGCAAAAGTGGTATTCATAGAAGatccaggaggactccacttttgaaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18283 lncRNA downstream 91473 26275177 ~ 26303459 (-) True G14723
TU18227 lncRNA downstream 210154 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA downstream 210154 26181744 ~ 26184778 (-) False G14676
TU18219 lncRNA downstream 245848 26148305 ~ 26149084 (-) False AMCG00016617
TU18197 lncRNA downstream 295960 26097728 ~ 26098972 (-) True G14650
TU18347 lncRNA upstream 29607 26425032 ~ 26425250 (-) True G14775
TU18409 lncRNA upstream 31914 26427339 ~ 26518279 (-) False G14816
TU18415 lncRNA upstream 35030 26430455 ~ 26432353 (-) False G14818
TU18418 lncRNA upstream 35030 26430455 ~ 26468099 (-) True G14818
TU18414 lncRNA upstream 68357 26463782 ~ 26468099 (-) False G14818
AMCG00016630 mRNA downstream 13203 26380048 ~ 26381729 (-) True AMCG00016630
AMCG00016627 mRNA downstream 20330 26373019 ~ 26374602 (-) True AMCG00016627
AMCG00016628 mRNA downstream 51318 26339493 ~ 26343614 (-) True AMCG00016628
AMCG00016629 mRNA downstream 85569 26304915 ~ 26309363 (-) True AMCG00016629
AMCG00016623 mRNA downstream 153542 26239082 ~ 26241390 (-) True AMCG00016623
AMCG00016634 mRNA upstream 46734 26442159 ~ 26446820 (-) True AMCG00016634
AMCG00016643 mRNA upstream 189971 26585396 ~ 26591527 (-) False AMCG00016643
AMCG00016644 mRNA upstream 231282 26626707 ~ 26643493 (-) True AMCG00016644
AMCG00016645 mRNA upstream 260163 26655588 ~ 26660740 (-) True AMCG00016645
AMCG00016642 mRNA upstream 266661 26662086 ~ 26664301 (-) True AMCG00016642
TU18278 other downstream 153826 26239082 ~ 26241106 (-) False AMCG00016623
TU18225 other downstream 210154 26181744 ~ 26184778 (-) False G14676
TU18226 other downstream 210154 26181744 ~ 26184778 (-) True G14676
TU18222 other downstream 235490 26156521 ~ 26159442 (-) True AMCG00016616
TU18183 other downstream 311765 26081503 ~ 26083167 (-) True G14637
TU18405 other upstream 31914 26427339 ~ 26518279 (-) False G14816
TU18407 other upstream 31914 26427339 ~ 26520397 (-) True G14816
TU18445 other upstream 173244 26568669 ~ 26571641 (-) True G14843
TU18448 other upstream 173244 26568669 ~ 26571641 (-) False G14843
TU18636 other upstream 873395 27268820 ~ 27279334 (-) True AMCG00016671

Expression Profile