RNA id: TU18415


Basic Information

Item Value
RNA id TU18415
length 914
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G14818
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26430455 ~ 26468099 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNGCTGACCACCTTCCCATCCACGACCTCCTCCACTATGGTCACCACCTTGCGAGTTGTGGTGGAATCTGTGCTCTTTGATGAGTCTGTGCTTCTGCTGCCTTGACTGCTTTGGCTGCTTTGTTGAACTGCTGACCTGCATCTGGAGATTCGATAGCATCTGGCTGTACCGGTTCTGCGTGTCGACCAGTGTCCCCTCCAGAGATTGTttctgtgggagagagagagagagactgttagaaagacagacacagacagaatgagtgagagacagagagcaagaTAATACaagtgaaagagagaggatgagaaagaaagagtttagagagagagaaagagagagagagagagcactttTGTGTAGCGGCAGTGTTCTGCAGGGTCTCACCATGCTCAGCTGGGACTGTAGCTCTATCTCCAACCCCTGCAGGGTCCTGCGCAGGTCTGTGATCTCGGTCTTGGTGGTCTGTAGGGTCTCCGTGCTTGTCACCACCTCCTTGTTGAGAGCGTCGGACTGCAGAtcggaggagagaaagagataaaGCCATCAGACACAGAGCAGTGGATTCTGGGAAGGCACTGGGatgaaaatgtgaagaaaaacaggCAACCAGCAGagcaattgttttaaatggaacAGGGTCACATGTTGAACAAGACAGAGGACGGGGGGGACAGAGGACAGTATGaatgtaaatgtgtacattaCCTTCTCCTTGAACCAGCTCTCCCATTCCCTGCGACTCTTGTTTGCCATGCCTTCGTACTGCTCTCTGATCTCTGCCAGCACCTTGGACAGGTCTGTCCTGGCCAGGGTCAGCTCGTCCAGCATTCTCCTCAGCCCGGCGATGTCCGCCTCCACCGACTGCCGCATGGCCAGCTCGTTCTCGTACCTGCAACCATCGTAGAACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18347 lncRNA downstream 5205 26425032 ~ 26425250 (-) True G14775
TU18337 lncRNA downstream 35030 26394932 ~ 26395425 (-) True G14765
TU18283 lncRNA downstream 126996 26275177 ~ 26303459 (-) True G14723
TU18227 lncRNA downstream 245677 26181744 ~ 26184778 (-) False G14676
TU18414 lncRNA upstream 31429 26463782 ~ 26468099 (-) False G14818
TU18416 lncRNA upstream 33972 26466325 ~ 26468099 (-) False G14818
TU18432 lncRNA upstream 90451 26522804 ~ 26523047 (-) True G14832
TU18442 lncRNA upstream 150173 26582526 ~ 26592300 (-) True AMCG00016643
TU18464 lncRNA upstream 194424 26626777 ~ 26631875 (-) False AMCG00016644
AMCG00016630 mRNA downstream 48726 26380048 ~ 26381729 (-) True AMCG00016630
AMCG00016627 mRNA downstream 55853 26373019 ~ 26374602 (-) True AMCG00016627
AMCG00016628 mRNA downstream 86841 26339493 ~ 26343614 (-) True AMCG00016628
AMCG00016629 mRNA downstream 121092 26304915 ~ 26309363 (-) True AMCG00016629
AMCG00016623 mRNA downstream 189065 26239082 ~ 26241390 (-) True AMCG00016623
AMCG00016634 mRNA upstream 9806 26442159 ~ 26446820 (-) True AMCG00016634
AMCG00016643 mRNA upstream 153043 26585396 ~ 26591527 (-) False AMCG00016643
AMCG00016644 mRNA upstream 194354 26626707 ~ 26643493 (-) True AMCG00016644
AMCG00016645 mRNA upstream 223235 26655588 ~ 26660740 (-) True AMCG00016645
AMCG00016642 mRNA upstream 229733 26662086 ~ 26664301 (-) True AMCG00016642
TU18278 other downstream 189349 26239082 ~ 26241106 (-) False AMCG00016623
TU18225 other downstream 245677 26181744 ~ 26184778 (-) False G14676
TU18226 other downstream 245677 26181744 ~ 26184778 (-) True G14676
TU18222 other downstream 271013 26156521 ~ 26159442 (-) True AMCG00016616
TU18183 other downstream 347288 26081503 ~ 26083167 (-) True G14637
TU18445 other upstream 136316 26568669 ~ 26571641 (-) True G14843
TU18448 other upstream 136316 26568669 ~ 26571641 (-) False G14843
TU18636 other upstream 836467 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 937237 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 969323 27401676 ~ 27403922 (-) True G15067

Expression Profile