RNA id: TU18416


Basic Information

Item Value
RNA id TU18416
length 1052
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G14818
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26430455 ~ 26468099 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttcttaaataaaaaacacagacaaggtgttttattttccaccaAACAAAGGTTTATTCTCCTGAGACAGACGCCTTATAGGACAGAACAGGAAATAGAAAAAgggtttgtttcagattttatcactctctctctcttttacttCACAAACAGCAGCTCATTTGAAAACACACTGAAGGGGATCGGCTGACTCATGTTGCTTTGGCATTGATGATTCTGAGGTATGTTTTGGAGAGACATGCTCAGCATTCGAATCAGAGCAGGTGGCATCACTCAAACCCCCAAGTGTGCAGGACTCTAACCCGAGCCTCGACTCCAATCTTTGACATTGCGCTATGCAAAGACCATGCATGTATCATTTAACCTTTTCTCAAGGGACTAAGTGgtgtcttttcttgttttgttttgttcttaacaGAGACGAGAGACATAGAGGTTACAGAGCACAGAGAAGTACTGCCGAGCTTAAGCTGTGAAGGAGGCAGATCTGTGGGCGGGGGGGAagcgaggaggaggaaggtGTCTGTCTGAGAGACTGTGGACCCCTGGCTTCTGTCTCTATTTGCTGGAGtggatggagggagagagagggagagagagggagagagagtggggaggCAGTACTCAATGAGCAACAAGCAGGGATTGTCAAGATGATGTCACATTCTAAACCTCTGATTTTCCAGCATAACTAAAGCTGCCATGGGTCTTGGTGGGCACCACCCCTCTGTGGGCAACACTGCTAGGAAGGATGAACTTAATTCTGCAGGAGAGACTGAAAAGTTCCTGTATGTAAACAACCCTACAGAAACTGTTACCGATCCCTAAGTCACCCCCCCAACACTGTCAACATGCACTTGGTAAAAAGACACTAATGGTTATGATCGCGACCTTCTGTAATCTGGTACATCTAAGCACAGGATCCAACCCACATCCTAGGCCTGACAGGTAACCAAAGACATGAGGAGATATCACAGCCCTACCCTCCCACAATCCCGCACTCCCTGTGCCCCTCCCTCCCACTCACCATGCTGAGCTGGGACTGCAGCTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18415 lncRNA downstream 33972 26430455 ~ 26432353 (-) False G14818
TU18347 lncRNA downstream 41075 26425032 ~ 26425250 (-) True G14775
TU18337 lncRNA downstream 70900 26394932 ~ 26395425 (-) True G14765
TU18283 lncRNA downstream 162866 26275177 ~ 26303459 (-) True G14723
TU18228 lncRNA downstream 281547 26181744 ~ 26184778 (-) False G14676
TU18432 lncRNA upstream 54705 26522804 ~ 26523047 (-) True G14832
TU18442 lncRNA upstream 114427 26582526 ~ 26592300 (-) True AMCG00016643
TU18464 lncRNA upstream 158678 26626777 ~ 26631875 (-) False AMCG00016644
TU18490 lncRNA upstream 272986 26741085 ~ 26742338 (-) True G14882
TU18569 lncRNA upstream 511059 26979158 ~ 26983486 (-) True G14943
AMCG00016634 mRNA downstream 19505 26442159 ~ 26446820 (-) True AMCG00016634
AMCG00016630 mRNA downstream 84596 26380048 ~ 26381729 (-) True AMCG00016630
AMCG00016627 mRNA downstream 91723 26373019 ~ 26374602 (-) True AMCG00016627
AMCG00016628 mRNA downstream 122711 26339493 ~ 26343614 (-) True AMCG00016628
AMCG00016629 mRNA downstream 156962 26304915 ~ 26309363 (-) True AMCG00016629
AMCG00016643 mRNA upstream 117297 26585396 ~ 26591527 (-) False AMCG00016643
AMCG00016644 mRNA upstream 158608 26626707 ~ 26643493 (-) True AMCG00016644
AMCG00016645 mRNA upstream 187489 26655588 ~ 26660740 (-) True AMCG00016645
AMCG00016642 mRNA upstream 193987 26662086 ~ 26664301 (-) True AMCG00016642
AMCG00016649 mRNA upstream 253688 26721787 ~ 26732090 (-) True AMCG00016649
TU18278 other downstream 225219 26239082 ~ 26241106 (-) False AMCG00016623
TU18225 other downstream 281547 26181744 ~ 26184778 (-) False G14676
TU18226 other downstream 281547 26181744 ~ 26184778 (-) True G14676
TU18222 other downstream 306883 26156521 ~ 26159442 (-) True AMCG00016616
TU18183 other downstream 383158 26081503 ~ 26083167 (-) True G14637
TU18445 other upstream 100570 26568669 ~ 26571641 (-) True G14843
TU18448 other upstream 100570 26568669 ~ 26571641 (-) False G14843
TU18636 other upstream 800721 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 901491 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 933577 27401676 ~ 27403922 (-) True G15067

Expression Profile