RNA id: TU18445


Basic Information

Item Value
RNA id TU18445
length 1071
RNA type TUCP
GC content 0.34
exon number 2
gene id G14843
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26568669 ~ 26571641 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgtttctcattttccaattttatttaattgggtgTACAAATGGGTTTtgataatagaaaacaaaagtgattaAAATCGATTTTCAAAATTCACCTGCCTTCTCTACAGCCTGATGTCCGAGACGCTCCTAATGCGAACGTCATGTGTTCACTAATTCCACTGACTGTGTTAAGAAGCCAGAGATGCGCCCTAGTAAACTCtgttgggggaagaaaaaaaaaataatatacactaTCTGGTTGGTTGAGGACATTGgttttgtggtttaaaaaggATATAGAGCCGAcctatgaaaaaaatgtaaggttTAACCACAGCTGCCTACATCTGTCAGTATGTACCAAGGGGGTGGGAACACTCCCCTGCCACCCGCTCCTATAACCGGCTTCTGCTCCCCTTTGCATGGCCCAGCAGTTTAAATGCGATGAGCGCCTTTTTCTTTTGGAAACTGTCCAGAAATGCCCCAAAAACAGCAAtgtggaaaacacaaaaaaaccaaaaaaaaacacaaacagccaGGGAGAACCTCGCGCACAACGCAGCACAACGACGCACAGCCCTCGCTGGGCTCGGTCACTCTCTCTTTTCGCTGGGCGCTTCCTCGGGTGCAGGCTCCGGGGGTGGCTCCTCGGGGGGGGCGCTGTTGCTCTCGGAGCCGGTGTTGCTGTCGCTGGTCCCCTCCTCCATCACGCTGTCGCCGCCCTCCGGGACGCTTTCCTTGTCCTCCGTGGTGGACGCCCCCTCCTCGCTAGGCTGCTGCCCCTCCAACACCTCCTCTGCCCTGGGCTCCTCCGCTGCCTGCTGACCTGTCTCCATGGAGGTGCTCTCggcctcctcctcttcctcttcctcctcctttttgGCCCCCTCCTCCGGCTCTTCCTCGGGGGGCTTGGCTGTGGCGGCGGCTTCAcgcttctcctcctccagggcgGCGGCAGCGGCTGCTCTCTCCGCCTGCTCGGCCGCCTCGCGCTCCCGCTCCTCCGCCCGCCGCCGCGCAGCCTCCTCCGCAGCCGCAATCTCCGCCGCTATCTTCTCCATGTCCACCTCCACCTTCAGGCTGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18432 lncRNA downstream 45622 26522804 ~ 26523047 (-) True G14832
TU18409 lncRNA downstream 50390 26427339 ~ 26518279 (-) False G14816
TU18418 lncRNA downstream 100570 26430455 ~ 26468099 (-) True G14818
TU18414 lncRNA downstream 100570 26463782 ~ 26468099 (-) False G14818
TU18416 lncRNA downstream 100570 26466325 ~ 26468099 (-) False G14818
TU18442 lncRNA upstream 10885 26582526 ~ 26592300 (-) True AMCG00016643
TU18464 lncRNA upstream 55136 26626777 ~ 26631875 (-) False AMCG00016644
TU18490 lncRNA upstream 169444 26741085 ~ 26742338 (-) True G14882
TU18569 lncRNA upstream 407517 26979158 ~ 26983486 (-) True G14943
TU18574 lncRNA upstream 423532 26995173 ~ 27003707 (-) False AMCG00016662
AMCG00016634 mRNA downstream 121849 26442159 ~ 26446820 (-) True AMCG00016634
AMCG00016630 mRNA downstream 186940 26380048 ~ 26381729 (-) True AMCG00016630
AMCG00016627 mRNA downstream 194067 26373019 ~ 26374602 (-) True AMCG00016627
AMCG00016628 mRNA downstream 225055 26339493 ~ 26343614 (-) True AMCG00016628
AMCG00016629 mRNA downstream 259306 26304915 ~ 26309363 (-) True AMCG00016629
AMCG00016643 mRNA upstream 13755 26585396 ~ 26591527 (-) False AMCG00016643
AMCG00016644 mRNA upstream 55066 26626707 ~ 26643493 (-) True AMCG00016644
AMCG00016645 mRNA upstream 83947 26655588 ~ 26660740 (-) True AMCG00016645
AMCG00016642 mRNA upstream 90445 26662086 ~ 26664301 (-) True AMCG00016642
AMCG00016649 mRNA upstream 150146 26721787 ~ 26732090 (-) True AMCG00016649
TU18407 other downstream 48272 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 50390 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 327563 26239082 ~ 26241106 (-) False AMCG00016623
TU18225 other downstream 383891 26181744 ~ 26184778 (-) False G14676
TU18226 other downstream 383891 26181744 ~ 26184778 (-) True G14676
TU18636 other upstream 697179 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 797949 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 830035 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 853252 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 2209831 28781472 ~ 28785507 (-) True AMCG00016732

Expression Profile