RNA id: TU18626


Basic Information

Item Value
RNA id TU18626
length 896
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G14992
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27262890 ~ 27274297 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTATAGTTTGGCAATGGGTATATAGCAAAATTTGAAAACGCAGGCAGGCGGGCAGGCAGCGCAAGGCAGATGTCTACCCATTTCTTGGCACCAACTTCTGCTCTTCCCTCAACTCTCAAAAGTAACGTAAGAAGTATCATAACAGTGGGGGATTAATTGgGCTTTCCTTTGTGTCGAGCCTGGACTCCGAGCAACATAAACACACGTTTAAAAACTCACTTGAAAAAACCCGTGCAACACTGTTGGAAAATACCAGAACACCATCTCGCCCAGAGGAAGCTGACAATAACCGACGAGAGGACTTGGACCTCAGCGGAAACACCGGCGAGGAATCACACCTATGCGGAGATAATTTGTATAAGCCCTGCTTTGCAAAGACAGAGGCCAAGACGAGCGTGCATGTCTGTCATTGTTGTCATATTTTGAATAACTCCAATGAAGACCGTTCGTTCACTGCACTGTGTACCTGCTAGATTTGCCTATgtaagtaaatgttttatttgtacaatgtaatgctgtgcagtttattattgattgattgattgattgattgattgattaactGTGATAATCGGTATCGATATATACGTTTACGTCGCTGATGTGTTCAATTCCAGAtaatttaattctttatttatgtttattatttttgctattGCTGGATGAGGTGCATGATGagataaatgttaaataacttTCGGAATTAACTGTCTATGTGTTAcaggtataaataaatgtaaaagtagAAGATACGGCATTTTACCAGTTTATATTCTAGTCTATATTTTCATATCTGCTAAAGTTTAAAAGTTATTGTCAACAAATGGCCGTAAGGATCAGGTCGTGtcttgtgtgtttctgttacCTTGttgcttattaaaatatatatatttaaa

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18559 lncRNA upstream 268942 26966297 ~ 26993948 (+) True AMCG00016663
TU18391 lncRNA upstream 547089 26715569 ~ 26715801 (+) True G14803
TU18390 lncRNA upstream 549761 26712231 ~ 26713129 (+) True G14802
TU18388 lncRNA upstream 557686 26704997 ~ 26705204 (+) True G14800
TU18377 lncRNA upstream 605572 26589606 ~ 26657318 (+) False G14791
TU18644 lncRNA downstream 7127 27281424 ~ 27282569 (+) True G15005
TU18672 lncRNA downstream 95292 27369589 ~ 27370138 (+) True G15025
TU18707 lncRNA downstream 268191 27542488 ~ 27544996 (+) False AMCG00016683
TU18718 lncRNA downstream 325513 27599810 ~ 27604875 (+) False AMCG00016691
TU18827 lncRNA downstream 523252 27797549 ~ 27799115 (+) False AMCG00016699
AMCG00016660 mRNA upstream 253149 26999267 ~ 27009741 (+) True AMCG00016660
AMCG00016663 mRNA upstream 269955 26991044 ~ 26992935 (+) False AMCG00016663
AMCG00016661 mRNA upstream 272577 26977195 ~ 26990313 (+) True AMCG00016661
AMCG00016655 mRNA upstream 344122 26911968 ~ 26918768 (+) True AMCG00016655
AMCG00016654 mRNA upstream 365356 26893279 ~ 26897534 (+) True AMCG00016654
AMCG00016668 mRNA downstream 84481 27358778 ~ 27364948 (+) True AMCG00016668
AMCG00016677 mRNA downstream 119661 27393958 ~ 27403922 (+) True AMCG00016677
AMCG00016680 mRNA downstream 131111 27405408 ~ 27405728 (+) True AMCG00016680
AMCG00016676 mRNA downstream 132434 27406731 ~ 27409921 (+) True AMCG00016676
AMCG00016678 mRNA downstream 139913 27414210 ~ 27416010 (+) True AMCG00016678
TU18379 other upstream 605465 26605526 ~ 26657425 (+) False AMCG00016635
TU18348 other upstream 830534 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other upstream 833563 26428723 ~ 26429327 (+) False AMCG00016633
TU18257 other upstream 973668 26285863 ~ 26289222 (+) False AMCG00016625
TU18064 other upstream 1312714 25940528 ~ 25950176 (+) False AMCG00016607
TU18699 other downstream 271697 27545994 ~ 27547609 (+) False AMCG00016683
TU18716 other downstream 314182 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other downstream 314182 27588479 ~ 27598648 (+) False AMCG00016691
TU18724 other downstream 338808 27613105 ~ 27619919 (+) False AMCG00016690
TU18835 other downstream 554971 27829268 ~ 27831694 (+) True AMCG00016705

Expression Profile