RNA id: TU18637


Basic Information

Item Value
RNA id TU18637
length 1220
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G14999
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27243966 ~ 27245247 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNGtatttgggtttttgttttgttttttggcatcCTCGCCCACCCTTGCGTGCAtgtttctgtctgtccctctctccttccctctccccctccattGAAACAGAAGGCTGCAGATAGTCGTTTTCAGATTTGGTGAAGATGGATCCCTGTTTCATCCTTAATCATGCCAAACTCGGACCCATTTGTCATGTTTACTCTGCGGTACAAAGGACGAGCCGTATGCCTGCCATTACCCCGACATCCAACGCTCCCTATAACAAATGAGCCCCCGTTTCTTCAAGAAGAGCTGTTTTTTTACTCCCCTTTTCCCTCcactactaaaacaaaaaacaaaaagcaaacgaAAACTAAGGCGAGTTTTCTCTCAATATGAGAAGTTCTTGAAGAAGTGTGGGATTTTGCTTTTTGCTCGCGTTTCGCCGACACACAACACGACCTGGACTGAAGACTATTGTGAATACGATGTGAAGCTCGTCATATAGAAACTTGATTATCACTTTACGGTTTCCTACAAAACATGAAGtgtattaaaacaatgataAAGACACGTTCTTCAACCCAAAGTATGACAACGAAGATTATAGATTTCTAGATATTAGGGGACTTTCAACATAAAGAGCCAAATCCCGTGAACAGCAATGCATCTTAAACACAGCACTATATAGCTATACTTCAGCGTTTTAATTACctcagttgtatttttattgttattttgtcttgttttatgaATGATATGGTGAcacttttgattttatttttatataattattattttttttccttgaaagTATTCGGAATTAGTCATTTATTCGTTTCCTGTACGTTCAGTGTAATTTAAGTGCAAATGTGCCCATGAATATAAAGAACAAAGGTGCGTAAGAcaagaatatattttctgttttaaaatatatatacttcatattttttattcttctctctatcctggtctctctctctctctgtctctctccctctgactctccttctctctttgtctcgcTCCCACTAAGAGTTTGggcatttgtgtttaatacttaaaatattttccttttacattCCAAAGGACAGCCCTGCCGCTAATGTCTCacaggagatttttttttttttttttgtagagcgttttttttcttgttctccGTGTATCTAccttaatatttgtaaatagaaatagaaataaataaaatgaaaaaagaacgaaaaaagaaaggaaataatttCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18574 lncRNA downstream 240259 26995173 ~ 27003707 (-) False AMCG00016662
TU18569 lncRNA downstream 260480 26979158 ~ 26983486 (-) True G14943
TU18490 lncRNA downstream 501628 26741085 ~ 26742338 (-) True G14882
TU18464 lncRNA downstream 612091 26626777 ~ 26631875 (-) False AMCG00016644
TU18442 lncRNA downstream 651666 26582526 ~ 26592300 (-) True AMCG00016643
TU18640 lncRNA upstream 18466 27263713 ~ 27265603 (-) True G15001
TU18659 lncRNA upstream 50838 27296085 ~ 27308958 (-) True G15016
TU18737 lncRNA upstream 149872 27395119 ~ 27398583 (-) True G15066
TU18742 lncRNA upstream 167753 27413000 ~ 27413229 (-) True G15071
TU18744 lncRNA upstream 170406 27415653 ~ 27415892 (-) True G15073
AMCG00016665 mRNA downstream 24242 27217458 ~ 27219724 (-) True AMCG00016665
AMCG00016664 mRNA downstream 31044 27210523 ~ 27212922 (-) True AMCG00016664
AMCG00016667 mRNA downstream 49065 27187836 ~ 27194901 (-) True AMCG00016667
AMCG00016662 mRNA downstream 240716 26996139 ~ 27003250 (-) True AMCG00016662
AMCG00016658 mRNA downstream 269315 26967410 ~ 26974651 (-) True AMCG00016658
AMCG00016666 mRNA upstream 2313 27247560 ~ 27247997 (-) True AMCG00016666
AMCG00016671 mRNA upstream 20640 27265887 ~ 27272025 (-) False AMCG00016671
AMCG00016674 mRNA upstream 40966 27286213 ~ 27286461 (-) True AMCG00016674
AMCG00016673 mRNA upstream 41627 27286874 ~ 27290861 (-) True AMCG00016673
AMCG00016672 mRNA upstream 54356 27299603 ~ 27313173 (-) True AMCG00016672
TU18445 other downstream 672325 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 672325 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 723569 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 725687 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 1002860 26239082 ~ 26241106 (-) False AMCG00016623
TU18636 other upstream 23573 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 124343 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 156429 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 179646 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 1536225 28781472 ~ 28785507 (-) True AMCG00016732

Expression Profile