RNA id: TU18640


Basic Information

Item Value
RNA id TU18640
length 1350
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G15001
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27263713 ~ 27265603 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTTTactagggggtgggggtggggggtagagGCAGCAATAAAAATGGAGAGTGAAAAGGAAAGAGCAGTGAGAAAAACAGAGGAGTGAAACGTGATTTGGGTTGAGGAGAGCAGTGTAGCGATGGGGGACTGGAAACTGTGAGAAACTGATATGACTGGACCAGATGGGAAAAGGGCCCGAACAGCGTACACCCGTTACCAGACCTTAGAGCTGGAGAAAGAGTTTCATTTCAATAGATATCTGACCCGGAGGAGGAGGATAGAGATAGCCCATGCGCTCTGCCTGTCGGAACGGCAGATAAAGATCTGGTTCCAGAACCGAAGAATGAAGTGGAAGAAGGATAATAAACTCAAAAGCATGAGTCTGGCCACAGCGGGTAGCGCTTTTCAACCCTAATGTACactaagattatatatatatataaatattatatcaGTAACTATGTGgggggtgggagtgggggggggggacgacaaaaaaaaaacaagaaactaaaaataacacTATTCTGAACCCGGAGTCCTGTACAGCGAGGCACATTCTGGCATGCTGTTGATGTTTTAgacaaacttaaaaaagaaaagaaaagaaaaatctgctgTGGTACTGCTAACACAAAACGTGTGTTtatctgttgttgttatttttttaaatgataattattcttactattatcattattgttattattatttgataagGGAAGAAAAGGCTCCCCAGTGCccgttgttattgttataaatatCGTTTATGTGTCACGTGCTATGTTGATGCTTTCTTGAAAGTTAGCATGTTTCCTGTGAGCTCCTAAATGTTATAACTTATTTACAATCTATAACAACTGTATAGTTTTAAGTTTACAATCTAGACACTCCTCTGCCCAGGGTTTTAAGCTAGACAGAAATTGCGCGGCTCTTGCAGATCTGCAAAAAGCCTCTGTGTTGTtctatcttgtttttttttttttttttttttttttaattatgattctGTTTTATTCCGTCATGTCCTACAAatctatggttttattttattttatttaaaaaaaaataagacatgtAAAAAATGCCGTCTAAATTCCTGTCTCCGTTGCTACGTGTGTATAATTCTATTCGAAAatgatatttgtatattattggATCATTCGTACGTTCCAGCAAGGATGTATATATTAGACATTTTTAATGTGACCAATAGGCTATCTGTAGTGGGCAGAGTGAATGACAAGCGTTCTGTGAAAAAATGGCAACCGTCACGTCTGACTGCCTGTAAGCATTTTGCCAATAcgctttttgtatttgtttgtagcTTAACTTggagtaaaaaataaagtttctcTTATTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18637 lncRNA downstream 18466 27243966 ~ 27245247 (-) True G14999
TU18574 lncRNA downstream 260006 26995173 ~ 27003707 (-) False AMCG00016662
TU18569 lncRNA downstream 280227 26979158 ~ 26983486 (-) True G14943
TU18490 lncRNA downstream 521375 26741085 ~ 26742338 (-) True G14882
TU18464 lncRNA downstream 631838 26626777 ~ 26631875 (-) False AMCG00016644
TU18659 lncRNA upstream 30482 27296085 ~ 27308958 (-) True G15016
TU18737 lncRNA upstream 129516 27395119 ~ 27398583 (-) True G15066
TU18742 lncRNA upstream 147397 27413000 ~ 27413229 (-) True G15071
TU18744 lncRNA upstream 150050 27415653 ~ 27415892 (-) True G15073
TU18745 lncRNA upstream 150646 27416249 ~ 27416539 (-) True G15074
AMCG00016666 mRNA downstream 15716 27247560 ~ 27247997 (-) True AMCG00016666
AMCG00016665 mRNA downstream 43989 27217458 ~ 27219724 (-) True AMCG00016665
AMCG00016664 mRNA downstream 50791 27210523 ~ 27212922 (-) True AMCG00016664
AMCG00016667 mRNA downstream 68812 27187836 ~ 27194901 (-) True AMCG00016667
AMCG00016662 mRNA downstream 260463 26996139 ~ 27003250 (-) True AMCG00016662
AMCG00016671 mRNA upstream 284 27265887 ~ 27272025 (-) False AMCG00016671
AMCG00016674 mRNA upstream 20610 27286213 ~ 27286461 (-) True AMCG00016674
AMCG00016673 mRNA upstream 21271 27286874 ~ 27290861 (-) True AMCG00016673
AMCG00016672 mRNA upstream 34000 27299603 ~ 27313173 (-) True AMCG00016672
AMCG00016669 mRNA upstream 72404 27338007 ~ 27339593 (-) True AMCG00016669
TU18445 other downstream 692072 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 692072 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 743316 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 745434 26427339 ~ 26518279 (-) False G14816
TU18278 other downstream 1022607 26239082 ~ 26241106 (-) False AMCG00016623
TU18636 other upstream 3217 27268820 ~ 27279334 (-) True AMCG00016671
TU18673 other upstream 103987 27369590 ~ 27370139 (-) True G15026
TU18738 other upstream 136073 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 159290 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 1515869 28781472 ~ 28785507 (-) True AMCG00016732

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU33382 False 1233 lncRNA 0.47 2 NC_056701.1 22724044 ~ 22725888 (+)