RNA id: TU18672


Basic Information

Item Value
RNA id TU18672
length 550
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G15025
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27369589 ~ 27370138 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCATGTCATGagaatttattatataaatctatatggacagatttgtaaaaaatatattaatcccCTTTCCAAAACCCGAGCAGAGAAGCAACATACGAGTTTCCAACCAcctgaggatttttttttttcatttgtaaaaatgtatttatatactttaaGGATATAGAATATAATAAGCTGATATGTATTTTAAGGAAGAATAAAATCAGACCGTATTGATGGGATCGTATGTGGCTGAGAATCCCCTCTTTGGCCAACGGGCGGTGGTGCAAGCTACGCAGTGTGGGCCGGTCTGTCAGAGACGCAGAGCTGTCCCAATCAGGGCCACAGAGCCCGGCCTGTCCCCGAGGACAGGGTCCACTGTACACAGTCCTGTCTGCAACAGGCAGTGAACAGAACCAGCAGGCCTTGATGTCAGTGTGACTCTTCGTCTTCCTGGGCctgcagaccctcatctctccgaCCTCAAGGCTGatgaacacacagacacccctgTGTTAGCTGAGAGGAGCATCACACAGACAGCACCATCAAGGACAGACaccacc

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18644 lncRNA upstream 87020 27281424 ~ 27282569 (+) True G15005
TU18626 lncRNA upstream 95292 27262890 ~ 27274297 (+) True G14992
TU18559 lncRNA upstream 375641 26966297 ~ 26993948 (+) True AMCG00016663
TU18391 lncRNA upstream 653788 26715569 ~ 26715801 (+) True G14803
TU18390 lncRNA upstream 656460 26712231 ~ 26713129 (+) True G14802
TU18707 lncRNA downstream 172350 27542488 ~ 27544996 (+) False AMCG00016683
TU18718 lncRNA downstream 229672 27599810 ~ 27604875 (+) False AMCG00016691
TU18827 lncRNA downstream 427411 27797549 ~ 27799115 (+) False AMCG00016699
TU18859 lncRNA downstream 466375 27836513 ~ 27839103 (+) True AMCG00016706
TU18885 lncRNA downstream 621924 27992062 ~ 27992282 (+) False AMCG00016707
AMCG00016668 mRNA upstream 4641 27358778 ~ 27364948 (+) True AMCG00016668
AMCG00016660 mRNA upstream 359848 26999267 ~ 27009741 (+) True AMCG00016660
AMCG00016663 mRNA upstream 376654 26991044 ~ 26992935 (+) False AMCG00016663
AMCG00016661 mRNA upstream 379276 26977195 ~ 26990313 (+) True AMCG00016661
AMCG00016655 mRNA upstream 450821 26911968 ~ 26918768 (+) True AMCG00016655
AMCG00016677 mRNA downstream 23820 27393958 ~ 27403922 (+) True AMCG00016677
AMCG00016680 mRNA downstream 35270 27405408 ~ 27405728 (+) True AMCG00016680
AMCG00016676 mRNA downstream 36593 27406731 ~ 27409921 (+) True AMCG00016676
AMCG00016678 mRNA downstream 44072 27414210 ~ 27416010 (+) True AMCG00016678
AMCG00016679 mRNA downstream 55542 27425680 ~ 27427034 (+) True AMCG00016679
TU18379 other upstream 712164 26605526 ~ 26657425 (+) False AMCG00016635
TU18348 other upstream 937233 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other upstream 940262 26428723 ~ 26429327 (+) False AMCG00016633
TU18257 other upstream 1080367 26285863 ~ 26289222 (+) False AMCG00016625
TU18064 other upstream 1419413 25940528 ~ 25950176 (+) False AMCG00016607
TU18699 other downstream 175856 27545994 ~ 27547609 (+) False AMCG00016683
TU18716 other downstream 218341 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other downstream 218341 27588479 ~ 27598648 (+) False AMCG00016691
TU18724 other downstream 242967 27613105 ~ 27619919 (+) False AMCG00016690
TU18835 other downstream 459130 27829268 ~ 27831694 (+) True AMCG00016705

Expression Profile