RNA id: TU18737


Basic Information

Item Value
RNA id TU18737
length 855
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G15066
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27395119 ~ 27398583 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACGAAGCCCCCCTAAAACCTGAAGTGTAGTCCCGCCGCTGGCGTTAGCTAGACAATGACATCATCAGCCACCTAGCTTACCTTGGAGCagacaaatgtatgtttgttaatCTTTGCGGTATTTAGCGGGGAATGGGGACTCTCACACTGTCTTATCCACTGCCGGCATCTTTCCTCTTCGGTTTTGGGCTttggaaaggggaaaaaaatgactcCCCCCTCTAAACTTCTGGGGTCCCTGCTGTCGGGTTTGCAGGGCTGCAGGCACAGCGTCTCACCATTGTGAGCCTGAACGACGAGAGCTTGATGGACCTTCTCGAGTAGTGACCTTATGCTAAGGTAGGATTGGACAAGGACCGTTTGGGGGCGGGGCTTTGCGAAAGGTCAATTACCATTACAACTATGATGCTTATTAGTGTTGCTGCAATGTGGGGAAAATCGAATTAAAAACTTGACTTTTCATGTAACATGAATACAGACCAAGACAAGCCCATCTCTCAACATGAACTCAGTTACAGCCACGCAGCACGTCTTAACACAGCGACCCCTtgtctgtgggtgtgtgtgtgtggggggggtcagACCTGTGTGGTGATGACCAGCAGGTCGGTCTCCAGGCTGTTGATGGTGAGGCTCTGGAAGCGGAATGGCGTGCTAGCTCCCCTCACCCCCCCATTACTGTCCACATAGCAGAACTGGTAGAATTCACCATCCTCCTTCGGCAGGTAGTAGGCTGCaaagacacatgcacacacTTCAAACACCACCTGCTGCTCCAATGGCTGCTCCCCTGGGGTCCCGGTAGTGGGGGGCGCCCACAGAAACGTGTAGTAGTCTCTTGTGGTGCTCCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18659 lncRNA downstream 86161 27296085 ~ 27308958 (-) True G15016
TU18640 lncRNA downstream 129516 27263713 ~ 27265603 (-) True G15001
TU18637 lncRNA downstream 149872 27243966 ~ 27245247 (-) True G14999
TU18574 lncRNA downstream 391412 26995173 ~ 27003707 (-) False AMCG00016662
TU18569 lncRNA downstream 411633 26979158 ~ 26983486 (-) True G14943
TU18742 lncRNA upstream 14417 27413000 ~ 27413229 (-) True G15071
TU18744 lncRNA upstream 17070 27415653 ~ 27415892 (-) True G15073
TU18745 lncRNA upstream 17666 27416249 ~ 27416539 (-) True G15074
TU18746 lncRNA upstream 25971 27424554 ~ 27424821 (-) True G15075
TU18755 lncRNA upstream 136742 27535325 ~ 27541840 (-) True G15079
AMCG00016675 mRNA downstream 14031 27375965 ~ 27381088 (-) True AMCG00016675
AMCG00016670 mRNA downstream 19419 27370979 ~ 27375700 (-) True AMCG00016670
AMCG00016669 mRNA downstream 55526 27338007 ~ 27339593 (-) True AMCG00016669
AMCG00016672 mRNA downstream 81946 27299603 ~ 27313173 (-) True AMCG00016672
AMCG00016673 mRNA downstream 104258 27286874 ~ 27290861 (-) True AMCG00016673
AMCG00016681 mRNA upstream 31519 27430102 ~ 27433860 (-) True AMCG00016681
AMCG00016688 mRNA upstream 111062 27509645 ~ 27516973 (-) True AMCG00016688
AMCG00016692 mRNA upstream 245056 27643639 ~ 27650849 (-) True AMCG00016692
AMCG00016693 mRNA upstream 257165 27655748 ~ 27669412 (-) True AMCG00016693
AMCG00016694 mRNA upstream 302429 27701012 ~ 27707529 (-) True AMCG00016694
TU18673 other downstream 24980 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 115785 27268820 ~ 27279334 (-) True AMCG00016671
TU18445 other downstream 823478 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 823478 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 874722 26427339 ~ 26520397 (-) True G14816
TU18738 other upstream 3093 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 26310 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 1382889 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2802876 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 3127709 30526292 ~ 30529500 (-) True G15787

Expression Profile