RNA id: TU18755


Basic Information

Item Value
RNA id TU18755
length 6230
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id G15079
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27535325 ~ 27541840 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCTCTGTTTAACAgacaagcattttatttttatttgcagagatcaatactaaacaaaaacactcgAGTAAAGAATACGAACTTTAATAAAAACCCAGCAACGTCTTGgttatttacaatgtttgtttCTGAAAGCTATGCACAGAGGCGATCAAATGTTGCATTGATTTTGTACAGATCTTGCTGTGAATAGGACTGTTATCCGACCTGGATGCAGCTGCAGGGTGTGTAGAACGAGCAAGACGGGGGAAATATCGCAGACCACTCCGTGCATTTCCATCAGACCAAAAACCCCAAAAATACCTGATTTATATATGCCTTCATTCATGTATTACTGCTTTCTACCAAACGTATCACGTAGGAAACAGGCCTGAAATAACGGAATAGATCGTCCCTCTCCAgctgcaacacaaaacaaatgtaatagcTTGTAATCTTAGCGCTCTATCAGCAAGCATGCCCAGATGcctaaaacaagaaataaaacactggCCAATTGACCTTGCTCAAAAATATGCTGAAAAAAGAATCAGTAAAATTAACGATTCAATTGCACAAGCTTTCCTCATAATGGGATAGGACTGGCATTAAAAACACAGGGAGCATCACAGCTAACAGCTCAGGGCGCAGCCTTCGGTCTGACAGTAGTTGGAAATCAAGAAGCCAAGAGGTCCTGCAAACAAGCTGTCCCAAGACACCGTAAAGGGTTTGAAAATAAGTAAGATCCGCCCTGCAGAGAGATGCTGTCCTTTCTACCCGAGACTGGGAGAAGAACCAAACCAAAACGTAAAACGTGTCTCTCAGTCTGTCTGCACCCACAGGCCCATCGAGTTTCGCGATGCAGTGTCgattaaacacaaacaacctGTGGAGGGATTTGCTGCAGTGCTCAGTCAACATCTCAGTAGAGATTAAAagatgacccccccccccctcgtaccctcctcttcctcctccaaaTGTTAGCTGTGATGCCTTGAAACTATAGAAACCCCAAATTAGCAGACACTCAATAACAGAGCAGACACCTGTGCCCCAGGCCTGGGTTTACACCTCGGATTTCAGCAGCACAGCAATCCAATTCAGTTCCTGCCTGACTGCAGCGACAACACAACGCCTCAGTGCAGAAGCACTGAACACAAACCAAGAGCAGCCCAGCTGCACAATCAAGAACACACAGCGGATACGCGTTCAGAACAATTCCCAATTCCCACAAGCTgacattttatactgtttattcATAAATACTGAATGCTGTTTTGTATTGGAAATGGAAGTGTTTAAACCACATTTTAGACTATATTTTCAaggggttgtgtttttttgcctccaatacattttctttttcaaactcCAAATAAAAGCCAGATAGCTTCccatacacacagatatatctatgtgcatgtgtgtatgttttaaaaaataccataaatgtattttttaaatgataatctTCACCAATGTGGCATCCAAAGATTCTCTTAATATTAAAGGAGGGAAATGTTATGATTTGTTGGATCACACAAGCAGTCTTGTTAGTGATGATCTCActggaaaaacacaatacacacaaaatcGTCCAATGACTTAAACCCACCTAACAGTTGTGGTCACATGGTCATTATTGCAACCATGAATGGGAACTAAAACATGAGCAGGGTTggagagggaaatggaaaaaaaactaaaaaacaggtTTATAAAATCCAAGAttttatcaaacaaaaaaaaaagtgaacatgttgttctttttggttttgtttgctcAGAATATCCCTGCTTTGTCAGTGAAACATCAATGAAGGCACTATGATTCTGACAGACGAAAAGAGACAGAGATCCCTGGGACACTTACAGGGCAGACTCGAGGAGATTACAGTTTTATTCCATCTACACAAATGTACAGGATTGTTTCACCCTCTTCCTCTCAAATTACAACTTCCAATGGCTGGGTTAACGAGCCATCGACTCTATACATGACTTGACTGTCATAcatgcccccccaccaccctcacACCACTAAGTCGCTGTATAGCAGCCAACCTGACAGTCAGAGATCTGCTCTAGGGTGTTGTTTTGTGGTGCATTTTGTTCTCAGACTATGCCAAAAAAAACAGAGAGCGATCAGTCACAGCTGGACACGTTGTACACAACAGtgatgagaaaaacaaacaaaaaaacagaacttaTCAAAACATGAACAACTcaaatgatgtaaaaaaaaaaaaaaaaacctgaatggTATCAACACCTTAAACAGAGGAACATGCATTCAACAGGTACTCTTCCCTCCTGAAGATACAGTGACAGTGCTACAGCTATCagactatttatatatatatatatatatatatacacacatttattttcatccatatcattttaatggtggTGTATTTTGTAACATGCTCCTCTTctctgggttttattttttccaacaaACATAACAAGTGAGTAACTGATCTTACTGTATTTCACAATTTGATACCACAGACAGGAGAAACTGAACAGAacaagtgtaaaaaaaatatatactctttaaaaaatacaggagACCGAGAACTCAAGAGAGAGGGGGCGCTTATCTGGGTTTCCAGAGTTCCTTAGAACAAGtctgttgctttattttttagctTTTAGTTTTAGGATCTTTCAAGGTACAGTGGTcaaacaagataaatatatatacatgagcACTATAGTAACCCAGGCCATGAAACCCTGCAAGATTCTGTCACACTCAGAacgttttattttgaaaggctATTGCAACTGAATCCTTCGCCATGTGAAACATTCATATCAAAAACCAGGATTCTCAGATTTTGGATTCTCCTTTGTAGAGTTTTAAAACCCCAAAATTTTATTCGAATTTTACTCCTACCCAGTTTCCCCATTCCTACTTGTGAAAGGTGAAGTATCCTTTCCCAGAACACACTgcagcattacattttacagaggGGTGCTGCTCAGGCTCCGGtctgcatgcgtgtgtgtatggTCCTACGGATGTACAGATCCACGTCACTGTACagattcccccccacccacccacccaccaaccaacccacccacccaccacaAAAAAGGTGCAGAGTACAGAAATTATAATCCCCCTTTACATTctatacacacacttacacgGGTGCACCCTGTATTTTAACATGCACAAGAAACAAGCAGAAATAGAAGCTTCCGGGGGCAGAGGTCAGACCCCACATTCGCACACTAAGCGATCCGCTCATCCTCAGACCGGACCCCTGCGGCACACTGGGCACTGTGACGGCACGCCTCGGCAGCACTGCGATCGTGGAGGGCCGTGGTGGTGGGGTGTGGGGCTCTCGTTCTCAGGCTGCAACACGTGCAACAGCACCGCAGGAACAAGGAAGAGTCCGGAAGGAACAAAATCAGTCCCCCcccataaaaaacaacaaccttctTCATACAACAGCGCTGCAGCACCACTCCAGAGCCGGACCCCCCAGTGGAGACCAAGGCTTCCAGCTGCCGCAGCACCACCAGTCTTTAGGAGTGAACCACCAGTATGGTTTTCCTTCTCAGGTCTTCCTACTTAAAggagattttaaaaacagacagttctatcttgtttgctttcttgtttAGATCTTTTCTTGCCCTTGCCCCCCAGGTCCACAGAGCAGCCTGCAGGCTCCTTGCTCTGGATTTGCCCCTGTGCCCCCCCAGTCACCCCACAGAGCAGGCCTGCCCACTGCCAATGCAGTGGGATCTCACAGGAACGCTACCAGTACCGTGCTACATCAGCAGAGCGGGGGCAAGGTGGTCTGCGTACGTCCGCCTCCCCCAACCCCTCCATCCTCGAAATCAAAAtgtcttttgttgtttgtttgcttgcttgcttttcGTCTCCCAGATCCTTTTGTCCATTGATAAGGATAGGTTTTAGTTctctacaaaaaaacaaaaacaaaaaaacatccaataaaactaacccccccccccacggggggggggggggggggggggcagcacaGGAGAGATCTCGGCGGGCAGAGGCAAGGCAGACGTCTACACGGCTGGCGACATGACATACAGACACAGccgagagagggagacaggaagaATAACAACGAAAAAACCAAACACTCCCACAAGCCTGGTGCCTCTGGCGAGTATGTCAGAGTCCATGAGCACGGTCAGCCCAAAGCCCCCTGCTCTTTAACCCGACCGGCTCACGAGAATCAATCAAGGCAGGCTAGCATTCTTAGAAATACGGTTTCGTGTCAAAAGGATTGATCAGAGAAcagaatatttaattacaataaaaatagtgGGAGTAAAAGGCTTAGGGAGTATTTAGGTTTGGCTTTTTCTagttgtcattttaaaagtatatgcACATCCTCTACTTCAATATGACTTTACTAGATGTCAGACATCCCTCTTGCATAAAAACATGAATGCAACTGCTTTTGTCTTCACGACAGATAATTATTACAGtcataaaacttaaaaaaatttaaGCCAAAGCACAGTTTTGTTCACATCTTGTGCCTACGGTCAAAGTTCATGAGGTGAAGCCAGCAGAGagcatgttttcaaatgtttcgTGGGGCTCTGGCCCTCCATGCCCTCCTGTGGGAAGACTATCTGAGAGACAGGCTCTTAGCAAGGGCTTTAGAACCGCATTAATGATCCTCACCAGCTGCCCCAGTGGCTCACTGCGATGTTCCGAAATGGGCCGCCGGTACCGGCTAACATACATGAGCATCTTTCAAGCACAAGCCGAGAGAGGCGTACAGGAATGACAAAGAAAAGGGAGACTCCTAGCTGTATCAGCCGGCACTCACAGCTGAAGAAGAGAGGCTAAGCATGTGTCTTTCTCCAACGCAAAGAATAGCTTTATTCAGTCGTTTAGACAAAGACCTGACCCTATTGCcctctgcaaaaacaaaataaaagtgttgtGTATTGTACTTGCATTTTGAAGACAGCGCTTTCTGTGAAATTCTCACTCCCCCTTCTCCTGCACCTGGGTACCatcttgaaatatataaattgcaaaGATGTAATGGCTCTGCTTGtgcctctctcacacacacacacacacacacacacacacactgcagcagctcAGTGGGATTAAAACTCACTGCTTCGGCCTCTGTACGTTTACTTTGGACAAAACATGATTAGTTTGTGACCAACCTCTGGATGGTGTGACAGGGATGTGCCTTGTATTGTTGGGACAtgattttctatttattctaccaccacccctccctcctcctAGAACTAATTTTGTGGTTGCAGCAACTGTAGGCAGTACAAAGAGTTTCAGAACTGCTCCCATGCTATACGAGGCATTCACACATGCGGTGGCCTGCACTTGACACAATAGGGTGCGTGGTGGTAATTAAACAGGCCCTCGGTTTAACCTGCTGGCTTGCAAGACGTGAATTGATCTGAAGAGGTCTGAGTTTCCCAACAAACACTGGATAGGAGAGTCCCAGCTACACACAGCTGTGGAGGAAGTCCCCCCAGCAGGACAATAGGCATGGGGCGGGCCATGGTGACATCATCAATGggagtggaaaaaacaaaacaaaaaaacagtggaCTTACTGTTGGGTCAGTTTGGGCAGCGGCCGTCCAAAAGCAACTACTGGCAGGAAGGGAGTGATCATCAGGGATTCCACtggagaagagagacagagaaagacatcAGGAGACTTTCCCCGAGTATAGGATGGTGTTTTCTTGTGTGCGTTTTGCTTGCTGTTCCAAGCAGTCTGCCGTGTTCAGGAACTCTTTCGATCCTGACGTCAGATTCCCTGAACCCAGGCGCTGCCACCCAGCCCCATTCCCTGGGCCCTACTTTACAGCAGCCCTTGGCGCAGGGTGGCCCAGTCCTGATGCTGGAGGGCTGCAGTGCAGTCGCCTTCAGGTGTTGTGAAGGTGCTCAGGTGAAGCAAAACATCATCTTACTGGCATTACTCGGCCCGGAGAGTGGCGGCCATTTACATAGAGCTGGGGAGCCTTGCAGCACCAGGACtggggaggaaggggggggtggggaggggagaAGGGCAAGGACACCACACCACGCCAGCATATCACCCGTACCGTCATCGGCGTCAGGGTAGAAGGACGAGACCTCGGGCTCGCTCTCCTGGATGCCCTTCTTCTTGTACATACGCTGCTGCAGCCGCTGGAACATGCGCTGCTCCCTGATCCGCTGGATGTCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18746 lncRNA downstream 110504 27424554 ~ 27424821 (-) True G15075
TU18745 lncRNA downstream 118786 27416249 ~ 27416539 (-) True G15074
TU18744 lncRNA downstream 119433 27415653 ~ 27415892 (-) True G15073
TU18742 lncRNA downstream 122096 27413000 ~ 27413229 (-) True G15071
TU18737 lncRNA downstream 136742 27395119 ~ 27398583 (-) True G15066
TU18775 lncRNA upstream 8472 27550312 ~ 27553162 (-) True G15095
TU18848 lncRNA upstream 252752 27794592 ~ 27794980 (-) True G15165
TU18849 lncRNA upstream 254943 27796783 ~ 27797008 (-) True G15166
TU18858 lncRNA upstream 260289 27802129 ~ 27805042 (-) True G15172
TU18854 lncRNA upstream 268798 27810638 ~ 27815464 (-) True G15169
AMCG00016688 mRNA downstream 18352 27509645 ~ 27516973 (-) True AMCG00016688
AMCG00016681 mRNA downstream 101465 27430102 ~ 27433860 (-) True AMCG00016681
AMCG00016675 mRNA downstream 154237 27375965 ~ 27381088 (-) True AMCG00016675
AMCG00016670 mRNA downstream 159625 27370979 ~ 27375700 (-) True AMCG00016670
AMCG00016669 mRNA downstream 195732 27338007 ~ 27339593 (-) True AMCG00016669
AMCG00016692 mRNA upstream 101799 27643639 ~ 27650849 (-) True AMCG00016692
AMCG00016693 mRNA upstream 113908 27655748 ~ 27669412 (-) True AMCG00016693
AMCG00016694 mRNA upstream 159172 27701012 ~ 27707529 (-) True AMCG00016694
AMCG00016695 mRNA upstream 190475 27732315 ~ 27738429 (-) True AMCG00016695
AMCG00016700 mRNA upstream 264509 27806349 ~ 27809112 (-) True AMCG00016700
TU18749 other downstream 106674 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 131403 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 165186 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 255991 27268820 ~ 27279334 (-) True AMCG00016671
TU18445 other downstream 963684 26568669 ~ 26571641 (-) True G14843
TU19143 other upstream 1239632 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2659619 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2984452 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4881218 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4955667 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile