RNA id: TU18775


Basic Information

Item Value
RNA id TU18775
length 2776
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G15095
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27550312 ~ 27553162 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCGAGTGAAAAATGATACCGGGTGCACTATCATGAAAAGCTTTACAGTAAGCCGCCGAGAATTGCATTTACTTATGATCGTGAACAAGAGTTTCGTTTCGTATCCGTGCGGTTTTTGGGTTTCTTCTAACGACCACAAGCGCAACCCCCGGTCATTGCCCTCGCATTTGAACATTCGTGCGCAAAGCCGCCCCCTAGCGGCCGGCGGGCAGACTGCGGACTGACTGCAGGGGCAGCTGCGGCAGAGCgtcctgccccccccaccccaaaaaataCTGCTGACAAGACAAACTGCATTtttcaattgttatttttaattttttctccaCCGTTTCTccacaaagaaaatattacaaattcacaCCTATAAAATACACAAGCCATCACAGTGTTAACTGGTCTAGAGAGAAATTCAACTGATATGTAAAACCAACAAGACATGGATCCAATCTTTAAGGCAGAGAAAGTAGACGTTTCCTTCTTGAAACAATGTAacattaagaacaaaaatacctttaaatcaataatactTAATATTGTCAGGTTGCGTttagtgtaaaaaaaacaaatgaaaggtCATTCCTAGGGTTTATTTTTGATAATAGCCTAGAGCTCTGCCCTCCCCCACCTAGTTCAAACAGAAGGAACGATGAAAGTGTGCACGTTATTCTTGTCCTGTACAGGTCTGTGTGCATGCAAGCAAGGTCTGCGGAGAAGGAGAGTGTGAGGAGCTGCACTTCAGTCACTGAACATGGGAGTACTTCCCAGCCCAACTGCAGCTAGTTGTGGACAGGAGACCCCCACTCCACCCTTCACTCCCCCGATGCACAGAAGGGTCTCGCAATGAAAAACATTCATTTCCACTGGAAAAAAGGAACGAAAATccatctaaaaaataaattataataaacaggTAATCATTCTTCCCACAACCAAAATCACACATCTACACTCTTCCCACCAAGGCAAGCGGTTTAACGCCTGCAGCGAAATAACGCTAAAAACTATTCCCACTGGCCACAGCTCCGACCCCCTAGACACGTCAGGAGGAGGTCCAACAAAAGCTGCTGCAAAAATCAACAGCTGGGCCAGTAGAGGAGGCAGACAGTCTCGCAAACACCCTGTGCACAAGAACAATTACAGCTACAGTGGAGGCCAGAGGGTGCAGTGACCATTGTGCCCACCAGAGACTTTGGCCCAAGCACCGTACAAGTCTGCTGGGACaatgaatattttcaaataattgtttcttCTTCTCAAGCACAGAGCCAGATCCCAACAAGAGAAGTTAAGCGCTGTCGAGTCCACTGCCACCTCTGTAGCGCTGCACTCCAAGGGCAGGGCTGGGCTGCTGCACTCCGAGGGCCACAGGAGGCCCAGAATTACTAAACCGAAGTAGTCTTATCGCGTTTTAATCCATTCCTCACCGAGAGGTGAGTGGGGGCCCTTGAAAAGCAGTGGCAGAGTGAAAGTTAGCCTCTGCGAATCTCTGGAGACATCCGTGACTTATTCCTTTTGTTTAGACTCATACActcaatgtaataaaaaaaataaaaaataaaacattttttcatacatacataaaaaattaaaaaattctATGGTCCTGCTGAGGGTTTATACAGCGTGCAATGCTCGAGGAGTGGATCGGGACCTCTCCCTCAACGCCAGCTAGGTGTGCGACTGACCACGGGCCCGGTGGTCACAGACCTTCAGTGACCAGGAACAACTGGAATTCAGAAACATATNNNccccccccccacgcctCGCAGCAGACAGTAAGTGGttacattaagaaataataataaagaaaaaaaaaacgaattaaacTGCAGCACACCTCCTGAATGAAAGAAGTCTGGTCCGGCCCGCCAATCATCTGAGCTCCAGGGCCGACTACAGCCGGGGGGGTGTTTCTCCAAACCCATCAGTGCCATTCAACTGCAAAATCTTCACATGGCGTTTAAGACTCTCACACGTGGGAGTTGGCCTCGGATGTAGGGATTACGCACTATGCTCTGCCAGTCGAGCCCTGtgtacattttttcattatttgtttttccgaGATGCGAGAACAGAAGGGCTGTAGGCTGGTCCCAGGTCTAGCTACACCAGAGGGCTTCTGggtaatggggggggggggataaaactGACATTCGTGAACACTGCATATTTGATGTAGTTCATTTCTGCTAAATCAAGGAAACAattaatccaaattaaatataaatataaaaattcaGCCACTTAGGAAACATTAAGTGATTGCTCTTAAATGAAACATTAGGTTTTGCTCAAACTGATCCTCAAGTAAAGGATAAGACGCTATGCCATGTTAAGCCAGCAGAGGGAGCCTAGCAGGGACAGAGCCAGGACACATCAGGTCCGTCCGGTCACTCACTAGCACCAGGGGAACACGGGCCACCGGGCTCAAACAGGCCGTCTGCTACAGCAATGTCGCGACTCTCGCCCCTCCACACCTGAACACAAGACTAACACTTTCTTAATGAAGAGGGTTTGCACTATGAAGGCTTGGGAGAAAGCGTGCTTTAGATTTGTTGGGTGCGTTTTGTTCTTTcatcttccaaaacaaaaaaggaaaactgggTTTCTTCTGCGCGCTGCTGGCTGTTCAGTACACTGAGCTAGGAGCCCATCCTCTCCTCTTGTGCCAGCCGGTTCCTCTCAACCTGGAACAGACACACAGGATCAGTACACGGACAGATGCCCGAGAGAGAGCATGCAGTCAACCGCGGGGGCATTCAAAGGGGGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18755 lncRNA downstream 8472 27535325 ~ 27541840 (-) True G15079
TU18746 lncRNA downstream 125491 27424554 ~ 27424821 (-) True G15075
TU18745 lncRNA downstream 133773 27416249 ~ 27416539 (-) True G15074
TU18744 lncRNA downstream 134420 27415653 ~ 27415892 (-) True G15073
TU18742 lncRNA downstream 137083 27413000 ~ 27413229 (-) True G15071
TU18848 lncRNA upstream 241430 27794592 ~ 27794980 (-) True G15165
TU18849 lncRNA upstream 243621 27796783 ~ 27797008 (-) True G15166
TU18858 lncRNA upstream 248967 27802129 ~ 27805042 (-) True G15172
TU18854 lncRNA upstream 257476 27810638 ~ 27815464 (-) True G15169
TU18892 lncRNA upstream 330477 27883639 ~ 27884430 (-) True G15200
AMCG00016688 mRNA downstream 33339 27509645 ~ 27516973 (-) True AMCG00016688
AMCG00016681 mRNA downstream 116452 27430102 ~ 27433860 (-) True AMCG00016681
AMCG00016675 mRNA downstream 169224 27375965 ~ 27381088 (-) True AMCG00016675
AMCG00016670 mRNA downstream 174612 27370979 ~ 27375700 (-) True AMCG00016670
AMCG00016669 mRNA downstream 210719 27338007 ~ 27339593 (-) True AMCG00016669
AMCG00016692 mRNA upstream 90477 27643639 ~ 27650849 (-) True AMCG00016692
AMCG00016693 mRNA upstream 102586 27655748 ~ 27669412 (-) True AMCG00016693
AMCG00016694 mRNA upstream 147850 27701012 ~ 27707529 (-) True AMCG00016694
AMCG00016695 mRNA upstream 179153 27732315 ~ 27738429 (-) True AMCG00016695
AMCG00016700 mRNA upstream 253187 27806349 ~ 27809112 (-) True AMCG00016700
TU18749 other downstream 121661 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 146390 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 180173 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 270978 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 978671 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 1228310 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2648297 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2973130 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4869896 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4944345 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile