RNA id: TU18854



Basic Information


Item Value
RNA id TU18854
length 291
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G15169
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27810638 ~ 27815464 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTACCTTATTAACATTCAGCGATGCTAGAGGAGGAGGCGTCTCAGTGCGGTCGTTtattatatccacttctgaaacGTAGGCTAAATTAATCAGGATGACGTCGCTGAGGTTAGGCTTGCCGCTGGAGGAGGTGCATTCTGTCAAAGTCAGCATCTTGGACTGGTAGTCGAAGGCGACGACCTCCCCTTGCAGACGCTGTCCCAAGCAAGTGAGGCAGGAGACCTGGCTGCCGACACTGAAGTACTCCCCCGGTCCAGGAGCCGCCATCTTCTCCGCCAGGAAACCGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18858 lncRNA downstream 5596 27802129 ~ 27805042 (-) True G15172
TU18849 lncRNA downstream 13630 27796783 ~ 27797008 (-) True G15166
TU18848 lncRNA downstream 15658 27794592 ~ 27794980 (-) True G15165
TU18775 lncRNA downstream 257476 27550312 ~ 27553162 (-) True G15095
TU18755 lncRNA downstream 268798 27535325 ~ 27541840 (-) True G15079
TU18892 lncRNA upstream 68175 27883639 ~ 27884430 (-) True G15200
TU18893 lncRNA upstream 69622 27885086 ~ 27886560 (-) True G15201
TU18895 lncRNA upstream 70498 27885962 ~ 27886560 (-) False G15201
TU18906 lncRNA upstream 149079 27964543 ~ 27966856 (-) True G15207
TU18901 lncRNA upstream 164082 27979546 ~ 27988429 (-) True G15206
AMCG00016700 mRNA downstream 1526 27806349 ~ 27809112 (-) True AMCG00016700
AMCG00016695 mRNA downstream 72209 27732315 ~ 27738429 (-) True AMCG00016695
AMCG00016694 mRNA downstream 103109 27701012 ~ 27707529 (-) True AMCG00016694
AMCG00016693 mRNA downstream 141226 27655748 ~ 27669412 (-) True AMCG00016693
AMCG00016692 mRNA downstream 159789 27643639 ~ 27650849 (-) True AMCG00016692
AMCG00016701 mRNA upstream 24731 27840195 ~ 27842668 (-) True AMCG00016701
AMCG00016709 mRNA upstream 176183 27991647 ~ 27997674 (-) True AMCG00016709
AMCG00016713 mRNA upstream 276780 28092244 ~ 28107936 (-) True AMCG00016713
AMCG00016712 mRNA upstream 314590 28130054 ~ 28146016 (-) True AMCG00016712
AMCG00016714 mRNA upstream 332363 28147827 ~ 28148678 (-) True AMCG00016714
TU18749 other downstream 381987 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 406716 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 440499 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 531304 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1238997 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 966008 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2385995 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2710828 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4607594 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4682043 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile