RNA id: TU18858


Basic Information

Item Value
RNA id TU18858
length 2914
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G15172
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27802129 ~ 27805042 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggagtgttacatttgttgttgtgttgtttttgtcttccaaaaaataaaattcaaaggaaaagaaaattacaaatttaacACCATCTACAACACAAGACTGGTCGTTCACCACTAAAGGGGTAGAAAAATTCGCATCAACACTTTGTGTCATCAACTGAatgagttttaattaaataatacaattttaaaaaagcaagaaGTAAAAAAAGTTGAAGAATAATTTTTCTAACCACAAAAGGAAAAGTgttgatatttgttttcctcccatCCTTAGGAAacaattttattaaaaccatgttagcataatttgtatttttcttactCTGTGCCAAAAAATGAACTGCACTGAAAGCGATCTAAGACCTTTATGGATGCCTACAGAACTGTACAGAAGTGTGATGCTGCGGTGAGCGTGCACCAGTGACTCTTCACAGCCATGGCTACAGATCGGTGGCCTCTACAAGAAAAAAGCCGTGCTCATCTACACACCTGCCCCCTGAGATGCTGTGGCAGCACAGCCCCCTACTCAACCACCATCCCCCAGAACAGAACTCTTCCtccaaatgacaaaaataacaaatatccccccctaaaaaataaaacgtcCGATTCTCACAGACACTTTCTGTACCCCTGAAAGACCCCTCCTGTACACACCTCTACACCTCCCCCACCTGAGTGTCCAAAACAATATGGCTGACACCCTGCCGAGTATATATAGTCGCGGGAATAGGCAAGAGAGTGACAAACTGTACATGATTgttatacacgcacacacacgtacatatccatacatgtttaaatgaagggggggggggcatttctgtctttctcccaacagaaacagaaacatatcCTGCCATGTTTTCATCCAGGAGCAAAGACACACATGAAAAACAGGCATGCTTGTGCTGCTCAGACATGGGGGGGGTTGTTGTATTGCTAGCCCCAGGCACATCGGAACGGAAAATGACCGAGAGGGGCAGGCAGGTAGTTTgagatggggggagggggtggtggtggttgtaGGCAGGGTCTTTGTAGTGCTGGGCCCTTGTGTGAAGCAGGTGAACAGACTGTgtgctatatttatataaatagatctctgtgtgtgtacagtatatagacactatatattatatacagttaaGATTTGTGCATGcgtgcacacacgcacatgcacacgcaggGCAGTTCTGCACACTGGGGGAACAGTGTGTGCCTGACGCAGAGCACCCTGGGAATCAGTGCGCACCACAGAACACACTTCCTGTCCACTGTGTGTAGCCCTTactccctctttccctccctcttcctcccagTCTCTCACACTTTCAGATTGTAGTCTTCACCCCCACAGTACTGGGCCTGGGCTGGGTGCGATTTGGACTGCACTACATATGCAGCACAATGCAGTTCAGAAATTAACTTTAAAGCAGAGGCTGGTCAGAGTATATCACTGTTGTTGGCAGTTTtctaaaaggaaattatttttttatcctccACCCCCAGACCAAGAAGCGGGTGAAGCTGATCACTGAGCATTGCAGGAAAGCCGCTCTCCTCCCcactaaatataaaataaaaaccaagcaaaaaaaaaaacagacaaagtaAAACCCCATTTTCTGCTCTCAAGAGGAGCCTGCTAAGAGAGCTGAATATACAACTACCAAACCATCAGAGAGAAGAGGGAAAATCAGGAAAGAAAAGATCCCAGATCAGGCCACATGACCGCAGAGAAGGGGGGGTGATTGAGCAATGCTTATTTCACTTctcaatccatccatccaatcaatcaatcaatcaatgtatTTCAAGGAGAAATCAGagttaagtaaataaaccagcATGACCTGGAAccacacaaaacagagcagtCAGTCCAACAGCTCAAAGACAAAAACTGCTGTTGGAAGGTTCCTACTTgttattagtttttttacaattcaattttgatttagtatagcgccctttgTAGGGTAGCCACAGATTGAATATACAGTTCATACAGGTAGTATAAACGGTTTTCTGTTGCATTTGATTAAAGAGCGGATAGATATTAGAAAAGACCAGAGGCCCCATTCGGCCTACCATTCTCTTTTGGTCTGTAGTTGCTAATCCATCCCAGATTTTCATCCAGCCTTTTCCTGCAGGAACCCAGAGAGTTGGCTAACTCTACACTGCAGGCAGCTTTTTCAGACCCCTGCAACTCTTTGGGTAAAGTGCTctctctttgttgttgttgctggtaGTTGTTGATTCTCAAGTCAGAACTTGTGCTGTGTTCCTCTGAATTCctccatataaaatatatactaatatacCTATCAGATCTGTAATAGCTTCATTGCATGCAGGcatcttaaatacatttgctgtgGAATCTCCGAAGCAATTTTAGACTGTGTTGCTGGGTGGGGTGTGCGTTCTCGACTGGCGTTGAGAAGGGAGAAACACAGCACTTCCTCAGGATACAAGTCAACCTCCTCCTCCTGTTCTTACATAACCTCTACCTTCTGGCTTGAACAAACAGACcgaagtaaaagaaaacaaaaacaaataaaggagatgatgtggaaaaaaaatataatacactgaTACtatcaaatcaataaacagtACAACTATATTGCTGTGATCACATGAGAAACTAAAGTCCCTGTTGTGATTAGAGTCTGCAACAGTATCCTTTGCAGAATGTGTTAAGGCATCTCTCCCTGTCCTTGAAAGCCCGCATGTCTGACCCACATCGCTTATACATTCCTGTGACAGTGCAGCACTGCAGCGCTCTGCCTGGGTGTCCTGCTGATGAACACCGCGTCCACGGCACACGCTCCCGACAAGGGCACGCGCCTCCATATATGGCAATAAAGATAACAGAATGTGGAAGAGCGTGATGTCAGGTTTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18849 lncRNA downstream 5121 27796783 ~ 27797008 (-) True G15166
TU18848 lncRNA downstream 7149 27794592 ~ 27794980 (-) True G15165
TU18775 lncRNA downstream 248967 27550312 ~ 27553162 (-) True G15095
TU18755 lncRNA downstream 260289 27535325 ~ 27541840 (-) True G15079
TU18746 lncRNA downstream 377308 27424554 ~ 27424821 (-) True G15075
TU18854 lncRNA upstream 5596 27810638 ~ 27815464 (-) True G15169
TU18892 lncRNA upstream 78597 27883639 ~ 27884430 (-) True G15200
TU18893 lncRNA upstream 80044 27885086 ~ 27886560 (-) True G15201
TU18895 lncRNA upstream 80920 27885962 ~ 27886560 (-) False G15201
TU18906 lncRNA upstream 159501 27964543 ~ 27966856 (-) True G15207
AMCG00016695 mRNA downstream 63700 27732315 ~ 27738429 (-) True AMCG00016695
AMCG00016694 mRNA downstream 94600 27701012 ~ 27707529 (-) True AMCG00016694
AMCG00016693 mRNA downstream 132717 27655748 ~ 27669412 (-) True AMCG00016693
AMCG00016692 mRNA downstream 151280 27643639 ~ 27650849 (-) True AMCG00016692
AMCG00016688 mRNA downstream 285156 27509645 ~ 27516973 (-) True AMCG00016688
AMCG00016700 mRNA upstream 1307 27806349 ~ 27809112 (-) True AMCG00016700
AMCG00016701 mRNA upstream 35153 27840195 ~ 27842668 (-) True AMCG00016701
AMCG00016709 mRNA upstream 186605 27991647 ~ 27997674 (-) True AMCG00016709
AMCG00016713 mRNA upstream 287202 28092244 ~ 28107936 (-) True AMCG00016713
AMCG00016712 mRNA upstream 325012 28130054 ~ 28146016 (-) True AMCG00016712
TU18749 other downstream 373478 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 398207 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 431990 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 522795 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1230488 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 976430 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2396417 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2721250 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4618016 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4692465 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile