RNA id: TU18892


Basic Information

Item Value
RNA id TU18892
length 597
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G15200
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27883639 ~ 27884430 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTGCCCTGCTGGTTCACTAGGATGCGCTGGACGGGAGCTCTGACTAGCACAGCACCCCCTGCCTTCTGGATGACTGGGATGATGTGAAAGGGTATTTCGCTGGCCCCTCCTCGGGGGTAGTAGGCCCCTCGTTTGTAGTGGTGCAGCAGCAGGGCGTTAATTACACAGCTGGAATCTTTAGGGGGCACACCTgagtcaTAGAAGAAGTATGAGAAGATGACATGGAGGTCTTTGTTGCTGGTCAGTGTATTTAGCACCTCTGTGTGGCTGGAGCCGGACAGTCGAAAGATGGAGGAGAAGCAGTGAACGAGGCGTGACTTGATGAGGAACAGAGCCAGCCAGAGGGGAATCAACTTCAACATGGCCAGGTAGTGTGTCTTTCGAGCTGCTACCTGGAGAACAGAGTACAGATGTCTCTGAATGCAACGCTAAGTTTTAGATCTCTGGCTGTTCCTTGTTGCCATGAAACAGTTCCTTGAAGCCATGCTTCAGTAGCAAATGCAATATTTCTCCAGCTCAGTCCCAGAAACCCAGGCCAACATCTCATAGAAAAATGTAAGCTCAGGAAAGCATTCAAATAACCCCCAAACAAGAC

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18854 lncRNA downstream 68175 27810638 ~ 27815464 (-) True G15169
TU18858 lncRNA downstream 78597 27802129 ~ 27805042 (-) True G15172
TU18849 lncRNA downstream 86631 27796783 ~ 27797008 (-) True G15166
TU18848 lncRNA downstream 88659 27794592 ~ 27794980 (-) True G15165
TU18775 lncRNA downstream 330477 27550312 ~ 27553162 (-) True G15095
TU18893 lncRNA upstream 656 27885086 ~ 27886560 (-) True G15201
TU18895 lncRNA upstream 1532 27885962 ~ 27886560 (-) False G15201
TU18906 lncRNA upstream 80113 27964543 ~ 27966856 (-) True G15207
TU18901 lncRNA upstream 95116 27979546 ~ 27988429 (-) True G15206
TU18900 lncRNA upstream 98458 27982888 ~ 27988429 (-) False G15206
AMCG00016701 mRNA downstream 40971 27840195 ~ 27842668 (-) True AMCG00016701
AMCG00016700 mRNA downstream 74527 27806349 ~ 27809112 (-) True AMCG00016700
AMCG00016695 mRNA downstream 145210 27732315 ~ 27738429 (-) True AMCG00016695
AMCG00016694 mRNA downstream 176110 27701012 ~ 27707529 (-) True AMCG00016694
AMCG00016693 mRNA downstream 214227 27655748 ~ 27669412 (-) True AMCG00016693
AMCG00016709 mRNA upstream 107217 27991647 ~ 27997674 (-) True AMCG00016709
AMCG00016713 mRNA upstream 207814 28092244 ~ 28107936 (-) True AMCG00016713
AMCG00016712 mRNA upstream 245624 28130054 ~ 28146016 (-) True AMCG00016712
AMCG00016714 mRNA upstream 263397 28147827 ~ 28148678 (-) True AMCG00016714
AMCG00016719 mRNA upstream 311997 28196427 ~ 28209980 (-) True AMCG00016719
TU18749 other downstream 454988 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 479717 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 513500 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 604305 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1311998 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 897042 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2317029 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2641862 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4538628 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4613077 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile