RNA id: TU18901


Basic Information

Item Value
RNA id TU18901
length 2398
lncRNA type inter_gene
GC content 0.45
exon number 6
gene id G15206
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27979546 ~ 27988429 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCACTTAACATGCTTTATTTcagcattcaaaataattaaaaacatctcaaattattatacatatacaaaataggTACACATCCTCTTGTTTAACCCCCCGAAagtgtttttctgcttcttggagttcttttttctttaaatttttaatttttttcctattttcatatttttttaaacccttcgctggaaataaaaacaaacaaacagaagaaggGAGAAAAGTGGTGTGCTGCTGAAAGGAGCGAGATGACGACTAAAAAGGGGGAATTGGGGGGGGTGGGAAAAAAGAacaggggaaggaaaaaaacaaaaacaaaaatggaactaaaaaacaaatccacctGCTTAATTCACAGAAGACAGTCTACAGTAATCTCTCAGTTCCTGAAACTCAACTGTAGAGGTTTTGGTCTaacaccttaaaaaaataaaaacaattgtcacTCTCTGACAGGAAGACACTGTTTAATTAGTTTAGCACCAAAGATCCTGTAAgctttctgtgaaaataatatatatctgaaaaagaatatttttattatacactGCTTGCAGGACCTCATGAAGAAATAGCACCTTTTGCAGctgttatttgcatttaattattttgtttaatataatgattttttttgtagtgtAAAACCTGTCCTGGTGTTTACTCGACTCTAGGACACACGGATTGTTTCTGAGGTAGCCTTAAGATTTCATAATAAAGATGAACCCCTGTCCTGATGAGACTTTCTGAACAAtgctttcttttcctgttttttttttctccttgtggTTAGAACAACAAGACACTTCACTGTCgtttttcaaatttatttaaCACCTGAAAACGGTACATAGCATTTGGTTTTTCATTGTCCTTCTgcagtggtaaaaaaaaaaaacgtcaaaAAAAGTCACCTGTaatcaattacttatttttaaactccaggggattttacactttacaagtatatattattttcttgatGCCAGTGAaacaaaagatttttttttttttaaagtgtccTTGATGTAGGTGTCGGTAAAAGTAGTggtcccaaaaaaaaaaggttttcttttttttttaaagttgatAACACACAACCACCGTCTTCAGGAGTGTAGATTTAAGCAAGTGGACCGTTTGAGGCCGaatgagactttttttttaatgcatagaAAAGAGTTTAGAGAGATGAcggctagaaaaaaaaaaaacacaatttcaagtCCAGATTTCTTTTTTACAAGAAGCAGACTGGGCCAACTTCAAAGCCAAATTCCTGATCAGGTGCACCAACGTCCATAGGAGCGATGTCAATGATGGGCAGACGGGATGTTTTCGTTGTCTTGTAGTCGATGACTGTCTTGCCCCATGAGCCAGTGTGTCTCGTGCAGCCATCCTCGCTGACGCTGTAGGTGAAGCGGCTGTTGCCCTCGGCTCTGATCTCGATCTCGTTGGAGCCTTGCAGCAGCAGGGCCTTCTTCAGGTTGCCTGCCTCCTGGTCCATGTAAGCAATGCTGTTCTTGCAGTGGTATGTGATGTTCTGGGAGCTCTCGGTGGACATCAGACGCAGGAAGGTGAGCTGGATGTTGACATCATCGGCGTTGGAGCCCTCGCTACCATATTCGACTGGAATCCATCGCTCATTGCCTCGCCGAACCAGACGTGCTTCTTGTCCTTGGGGTTCTTGCTTGTGTACCAGTTCTTCTGGGGGATGCTAGCCTGGGTTGGGTAGACGCAGGTCTCGCCAGTCTCCATGTTGCAGTGGACCTTGATGGCATCAAGAGTGCATCCCTGGTTGGGGTCAATCCAGTACTCgcCGCTCTTCCATTCAGGGTGGCACATCTTCAGGTCCTTGCAGGTGCGGGCGGGGTTCTTCTTGGTGCCCTCAGGGCTGCGGATGTTCTCGATCTGCTGGCTCAGGGACTTGAGGGTGGTGTCAACCTCGAGGTCGCGGTCACGGGCAACATTGGCATCATCAGCTCTGTAGTGACGGAAGGGATCGGGGGCCTTCTCCTGAGCGGGCTGAGACACGAATCCGAAGTCGAATCCACCACCAGGGGGGCCTGGGGGTCCGGGGGGTCCGGGAGGTCCGGGGGGTCCAGCAGGTCCAGGGGCACCACCCTCACCCTAAAGACAgggcagggaggagagagatagagagagagagagagagagagagagaaggacaagTGAGGATGACTGCCATGACTGCCAAAACTAAGAATCTCTACCTTGCtgactttcatttatttttcctgatcCTGCTCTCCTTGGGCAGGGTGACTCACCTTATCTCCAGGGGCACCAGCAGGGCCGGGAGGACCAATGGGACCAGTCAAACCACGAACGCCATCTTTGCCAGGGGCACCATCAGCACCTTTGGGGCCACCATCACCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18906 lncRNA downstream 12690 27964543 ~ 27966856 (-) True G15207
TU18893 lncRNA downstream 92986 27885086 ~ 27886560 (-) True G15201
TU18895 lncRNA downstream 92986 27885962 ~ 27886560 (-) False G15201
TU18892 lncRNA downstream 95116 27883639 ~ 27884430 (-) True G15200
TU18854 lncRNA downstream 164082 27810638 ~ 27815464 (-) True G15169
TU18931 lncRNA upstream 14810 28003239 ~ 28058063 (-) True G15228
TU18956 lncRNA upstream 141583 28130012 ~ 28157200 (-) False AMCG00016712
TU18959 lncRNA upstream 172258 28160687 ~ 28160940 (-) True G15254
TU19002 lncRNA upstream 295933 28284362 ~ 28286445 (-) True G15291
TU19067 lncRNA upstream 462969 28451398 ~ 28451632 (-) True G15330
AMCG00016701 mRNA downstream 136878 27840195 ~ 27842668 (-) True AMCG00016701
AMCG00016700 mRNA downstream 170434 27806349 ~ 27809112 (-) True AMCG00016700
AMCG00016695 mRNA downstream 241117 27732315 ~ 27738429 (-) True AMCG00016695
AMCG00016694 mRNA downstream 272017 27701012 ~ 27707529 (-) True AMCG00016694
AMCG00016693 mRNA downstream 310134 27655748 ~ 27669412 (-) True AMCG00016693
AMCG00016709 mRNA upstream 3218 27991647 ~ 27997674 (-) True AMCG00016709
AMCG00016713 mRNA upstream 103815 28092244 ~ 28107936 (-) True AMCG00016713
AMCG00016712 mRNA upstream 141625 28130054 ~ 28146016 (-) True AMCG00016712
AMCG00016714 mRNA upstream 159398 28147827 ~ 28148678 (-) True AMCG00016714
AMCG00016719 mRNA upstream 207998 28196427 ~ 28209980 (-) True AMCG00016719
TU18749 other downstream 550895 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 575624 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 609407 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 700212 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1407905 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 793043 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2213030 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2537863 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4434629 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4509078 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile