RNA id: TU18906


Basic Information

Item Value
RNA id TU18906
length 402
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G15207
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27964543 ~ 27966856 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCACTCTCCGAATGGGATTTCTGGATTGGGGCAGTCAGATGTGTCTTCGCAGATCACCTCGTCGCACATGACGGTGCCGCTGTCGCACACGCAGATCTGGCAGGGCTCGGGTTTCCACACATCTTTGTCGTTATACAGTTGACCGTCCAATGTACAGCTGCCGGCCGGACGATCGTCCTCGCCTTGACCTCGTGCCAAAAGTACTGTTGCTGCGAGCAACAGCGCTAACCGAAAATCCACAAAGCTGAGCATGTCTAAATATTAGACATACAGACTCTTTGAGGCAAGGGGAATCCTGATCCTTTCTTTAGACTCCAGTCATACAAGTGAGGGTCCGGTCTCTGTATCTCCAATCCAGACCCCAGCAGAAACTCCCTACTGCCTAAACTAACGAATGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18893 lncRNA downstream 77983 27885086 ~ 27886560 (-) True G15201
TU18895 lncRNA downstream 77983 27885962 ~ 27886560 (-) False G15201
TU18892 lncRNA downstream 80113 27883639 ~ 27884430 (-) True G15200
TU18854 lncRNA downstream 149079 27810638 ~ 27815464 (-) True G15169
TU18858 lncRNA downstream 159501 27802129 ~ 27805042 (-) True G15172
TU18901 lncRNA upstream 12690 27979546 ~ 27988429 (-) True G15206
TU18900 lncRNA upstream 16032 27982888 ~ 27988429 (-) False G15206
TU18931 lncRNA upstream 36383 28003239 ~ 28058063 (-) True G15228
TU18956 lncRNA upstream 163156 28130012 ~ 28157200 (-) False AMCG00016712
TU18959 lncRNA upstream 193831 28160687 ~ 28160940 (-) True G15254
AMCG00016701 mRNA downstream 121875 27840195 ~ 27842668 (-) True AMCG00016701
AMCG00016700 mRNA downstream 155431 27806349 ~ 27809112 (-) True AMCG00016700
AMCG00016695 mRNA downstream 226114 27732315 ~ 27738429 (-) True AMCG00016695
AMCG00016694 mRNA downstream 257014 27701012 ~ 27707529 (-) True AMCG00016694
AMCG00016693 mRNA downstream 295131 27655748 ~ 27669412 (-) True AMCG00016693
AMCG00016709 mRNA upstream 24791 27991647 ~ 27997674 (-) True AMCG00016709
AMCG00016713 mRNA upstream 125388 28092244 ~ 28107936 (-) True AMCG00016713
AMCG00016712 mRNA upstream 163198 28130054 ~ 28146016 (-) True AMCG00016712
AMCG00016714 mRNA upstream 180971 28147827 ~ 28148678 (-) True AMCG00016714
AMCG00016719 mRNA upstream 229571 28196427 ~ 28209980 (-) True AMCG00016719
TU18749 other downstream 535892 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 560621 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 594404 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 685209 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1392902 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 814616 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2234603 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2559436 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4456202 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4530651 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU285806 True 558 lncRNA 0.53 5 NC_053132.1 8543486 ~ 8547194 (-)