RNA id: TU18924



Basic Information


Item Value
RNA id TU18924
length 674
RNA type TUCP
GC content 0.61
exon number 2
gene id G15223
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28104737 ~ 28105711 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGTTCCTGGGAGTGGTCACAGGTGAACAGCGTGTTCCCCTCAGAGTCCACGGAGCTCGACCAGCCTGCTGGTGCCTCCGAGTCGATATTCACCCTGGGCATGATGGCCTTTTTGATTGGGGCGTAGCTGAAGTCTTTTTGAAGCATCACAGGGGAAGCTTCCACTTCTGAAGGGTAGTCCTCCTCAGGCAGGGGGGCGGCCCATGGTCTCGATTGTTGTTCTCTGGCTCCATATCTGTCTCGGAAGGGGAGTGCAGCTCGGGGGGCTCCCAGGACGTGTCTCCAGTGACAGAGTTGTAGAAGTAGTAACGGCCGCTGGCCTCGTCCAGGTGCTGCTCCCAGTCAGAGCCCAGCTCGAAGGGGGCGGGAAGAGTGGGGACGATGGCGGcgggagagggggaaggggagggggagggagatggGGATGGCAGCTCCTCCAGAGTCGCCTCTTGGTCCTCAAAGGGACTCTCCCAGGTGGTCTGTCCTGTGAGCGTGTTGTAGAAGAACTCCTGGCCGCTATCCTTGTCAACGTGCACCTCCCAATCCACAGAGCTGGTGGACAGGGTTCGACGGGCAGGGGGCGGGGCTGGGGTGGTGTCGGGCTCCGCCCTGCCTTTCTTCAGCTCAGCTACGTTGACGTACACTGCAGAGCTGGGGTTCTCACTCTCCACCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18886 lncRNA upstream 111945 27992588 ~ 27992792 (+) False AMCG00016707
TU18885 lncRNA upstream 112455 27992062 ~ 27992282 (+) False AMCG00016707
TU18859 lncRNA upstream 265634 27836513 ~ 27839103 (+) True AMCG00016706
TU18827 lncRNA upstream 305622 27797549 ~ 27799115 (+) False AMCG00016699
TU18718 lncRNA upstream 499862 27599810 ~ 27604875 (+) False AMCG00016691
TU18926 lncRNA downstream 11207 28116918 ~ 28117190 (+) True G15224
TU18928 lncRNA downstream 12832 28118543 ~ 28119649 (+) True G15226
TU18958 lncRNA downstream 54954 28160665 ~ 28160887 (+) True G15253
TU18980 lncRNA downstream 120131 28225842 ~ 28230979 (+) True G15270
TU19065 lncRNA downstream 329273 28434984 ~ 28435256 (+) True G15328
AMCG00016711 mRNA upstream 14557 28073595 ~ 28090180 (+) True AMCG00016711
AMCG00016708 mRNA upstream 53706 28040024 ~ 28051031 (+) True AMCG00016708
AMCG00016710 mRNA upstream 76463 28006284 ~ 28028274 (+) True AMCG00016710
AMCG00016707 mRNA upstream 105960 27964578 ~ 27998777 (+) True AMCG00016707
AMCG00016704 mRNA upstream 216525 27881440 ~ 27888212 (+) True AMCG00016704
AMCG00016720 mRNA downstream 49051 28154762 ~ 28181038 (+) True AMCG00016720
AMCG00016722 mRNA downstream 174787 28280498 ~ 28286427 (+) True AMCG00016722
AMCG00016721 mRNA downstream 202891 28308602 ~ 28345826 (+) True AMCG00016721
AMCG00016728 mRNA downstream 553221 28658932 ~ 28660893 (+) True AMCG00016728
AMCG00016729 mRNA downstream 559103 28664814 ~ 28681501 (+) True AMCG00016729
TU18876 other upstream 226040 27872663 ~ 27878697 (+) True AMCG00016702
TU18835 other upstream 273043 27829268 ~ 27831694 (+) True AMCG00016705
TU18724 other upstream 484818 27613105 ~ 27619919 (+) False AMCG00016690
TU18716 other upstream 505145 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other upstream 506089 27588479 ~ 27598648 (+) False AMCG00016691
TU19419 other downstream 1967227 30072938 ~ 30074896 (+) False AMCG00016772
TU19422 other downstream 1975543 30081254 ~ 30083528 (+) False AMCG00016772
TU19434 other downstream 2003888 30109599 ~ 30113284 (+) True AMCG00016770
TU19453 other downstream 2130743 30236454 ~ 30236841 (+) True G15659
TU19688 other downstream 2953629 31059340 ~ 31061145 (+) True G15855

Expression Profile