RNA id: TU18958



Basic Information


Item Value
RNA id TU18958
length 223
lncRNA type intronic
GC content 0.33
exon number 1
gene id G15253
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28160665 ~ 28160887 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tttctgaaaatctaagtatatcatatcatatgctttcacatgatctacagctgcagttacatgttcaaaaaattctaataaattagtaagacatgatctgcctcatctaaacccatgttgactatctccaagaatatggttttcattaagatgctcctctattttctgtctaatcattttttccaacattttacaagtgatgcaggtgagactgattggtctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18928 lncRNA upstream 41016 28118543 ~ 28119649 (+) True G15226
TU18926 lncRNA upstream 43475 28116918 ~ 28117190 (+) True G15224
TU18886 lncRNA upstream 167873 27992588 ~ 27992792 (+) False AMCG00016707
TU18885 lncRNA upstream 168383 27992062 ~ 27992282 (+) False AMCG00016707
TU18859 lncRNA upstream 321562 27836513 ~ 27839103 (+) True AMCG00016706
TU18980 lncRNA downstream 64955 28225842 ~ 28230979 (+) True G15270
TU19065 lncRNA downstream 274097 28434984 ~ 28435256 (+) True G15328
TU19066 lncRNA downstream 290417 28451304 ~ 28451616 (+) True G15329
TU19084 lncRNA downstream 564600 28725487 ~ 28729054 (+) True G15346
TU19089 lncRNA downstream 596962 28757849 ~ 28761192 (+) True AMCG00016731
AMCG00016711 mRNA upstream 70485 28073595 ~ 28090180 (+) True AMCG00016711
AMCG00016708 mRNA upstream 109634 28040024 ~ 28051031 (+) True AMCG00016708
AMCG00016710 mRNA upstream 132391 28006284 ~ 28028274 (+) True AMCG00016710
AMCG00016707 mRNA upstream 161888 27964578 ~ 27998777 (+) True AMCG00016707
AMCG00016704 mRNA upstream 272453 27881440 ~ 27888212 (+) True AMCG00016704
AMCG00016722 mRNA downstream 119611 28280498 ~ 28286427 (+) True AMCG00016722
AMCG00016721 mRNA downstream 147715 28308602 ~ 28345826 (+) True AMCG00016721
AMCG00016728 mRNA downstream 498045 28658932 ~ 28660893 (+) True AMCG00016728
AMCG00016729 mRNA downstream 503927 28664814 ~ 28681501 (+) True AMCG00016729
AMCG00016730 mRNA downstream 521484 28682371 ~ 28718666 (+) True AMCG00016730
TU18924 other upstream 54954 28104737 ~ 28105711 (+) True G15223
TU18876 other upstream 281968 27872663 ~ 27878697 (+) True AMCG00016702
TU18835 other upstream 328971 27829268 ~ 27831694 (+) True AMCG00016705
TU18724 other upstream 540746 27613105 ~ 27619919 (+) False AMCG00016690
TU18717 other upstream 562017 27588479 ~ 27598648 (+) False AMCG00016691
TU19419 other downstream 1912051 30072938 ~ 30074896 (+) False AMCG00016772
TU19422 other downstream 1920367 30081254 ~ 30083528 (+) False AMCG00016772
TU19434 other downstream 1948712 30109599 ~ 30113284 (+) True AMCG00016770
TU19453 other downstream 2075567 30236454 ~ 30236841 (+) True G15659
TU19688 other downstream 2898453 31059340 ~ 31061145 (+) True G15855

Expression Profile