RNA id: TU18959


Basic Information

Item Value
RNA id TU18959
length 254
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G15254
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28160687 ~ 28160940 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agcaaatgtcatccaatccacaagaaagaggacaaaactgagccaggaaattacagaccaatcagtctcacctgcatcacttgtaaaatgttggaaaaaatgattagacagaaaatagaggagcatcttaatgaaaaccatattcttggagatagtcaacatgggtttagatgaggcagatcatgtcttactaatttattagaattttttgaacatgtaactgcagctgtagatcatgtgaaagcatatgatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18956 lncRNA downstream 3487 28130012 ~ 28157200 (-) False AMCG00016712
TU18931 lncRNA downstream 102624 28003239 ~ 28058063 (-) True G15228
TU18901 lncRNA downstream 172258 27979546 ~ 27988429 (-) True G15206
TU18900 lncRNA downstream 172258 27982888 ~ 27988429 (-) False G15206
TU18906 lncRNA downstream 193831 27964543 ~ 27966856 (-) True G15207
TU19002 lncRNA upstream 123422 28284362 ~ 28286445 (-) True G15291
TU19067 lncRNA upstream 290458 28451398 ~ 28451632 (-) True G15330
TU19115 lncRNA upstream 520898 28681838 ~ 28682338 (-) True G15364
TU19116 lncRNA upstream 534758 28695698 ~ 28695920 (-) True G15365
TU19205 lncRNA upstream 905171 29066111 ~ 29066388 (-) True G15448
AMCG00016714 mRNA downstream 12009 28147827 ~ 28148678 (-) True AMCG00016714
AMCG00016712 mRNA downstream 14671 28130054 ~ 28146016 (-) True AMCG00016712
AMCG00016713 mRNA downstream 52751 28092244 ~ 28107936 (-) True AMCG00016713
AMCG00016709 mRNA downstream 163013 27991647 ~ 27997674 (-) True AMCG00016709
AMCG00016701 mRNA downstream 318019 27840195 ~ 27842668 (-) True AMCG00016701
AMCG00016719 mRNA upstream 35487 28196427 ~ 28209980 (-) True AMCG00016719
AMCG00016716 mRNA upstream 50904 28211844 ~ 28214306 (-) True AMCG00016716
AMCG00016715 mRNA upstream 54740 28215680 ~ 28221102 (-) True AMCG00016715
AMCG00016717 mRNA upstream 68835 28229775 ~ 28253184 (-) True AMCG00016717
AMCG00016718 mRNA upstream 103404 28264344 ~ 28272545 (-) True AMCG00016718
TU18749 other downstream 732036 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 756765 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 790548 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 881353 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1589046 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 620532 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2040519 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2365352 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4262118 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4336567 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile