RNA id: TU18980


Basic Information

Item Value
RNA id TU18980
length 5072
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G15270
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28225842 ~ 28230979 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTACATGTACCCCTTTATTGGATAATTTACAATAGTCTATTCTACAACATGTTTACAAAGTAAAAGGCTTTTATATAGATAATACAAAGGAATAAATCTTAAAAATCACTTCCAGCTCTGAGCAACAAGTATGTACAAGCAACACTGATAGTATGCATACAGCTTCTGGTACCGAAAATGACTCTCCCTCAATGTAAACAATGGtttaatatgtaatttacaAGTcaccataaaaacaacaagctgACAAAAGGCAACCTTTAATAGCTATtttaatcattcatatttagGCAGCACACTAGATTTTCATATCGAACAGTTTTGAAAACGTCTCAGTCTTTCTTTGAACTTTGCAAACAGTTTGAAGGTGAACAATTTCAGCAGCTTCAGTAACAGAGATGTCAGTACATTGGGTTCActccatttaaaacaataggtACATATAATAGCTGTGCAATCATTGTAGTTGTAGTCTTTGTCCTTGTCAATATATGTACCTTCAGGGAGACTGTAAACTATTTAAGGCTGGGCAGACTAGAGTTGATAATTGATGTTGAttttaggaaaaacaaaaacccaacaaCAACTGCAACAATTTTGGATTCCTCCTACCTCAGTTCACTCAGaagtacatatttaattaagtcTTAATTGGACAACATAAAACATTGTGGAATTAAACTGTTTCATTGGTATTAACTGTGCGTATCAGATGTGTTTGTAAAGAAAAACTAAGTGTTGatcttcagtgttttttcttttttccactaAATATCATATAGTAATAAATATCATATAAACTGTTTACATATGTTTTACAGAGGCCAACATGTTTGGTTCTGATCCTTTAAACTGCCAGATTGGAGCAGTTTatgtaacatatttaaaacGTACAAGAATTAGATTGTACTGGATTATATTCCTTCCTTAAAATGAAAGAAGTTCAAATACaggttacatttaattatgtagGTTACAAATGATAACACATATatcttatataatatataactgaTATTACTTATAATTTGCTgctttgtgaaatataaatgaaatgttaacaGTTGTTACTTGCACAggcaatattaataaaagtgcttgttatgtgtatatatatatatatatatatatatattcaaaattaagactttttatttaagacatttttgtttgtaaatacatctatattttaaagcaagtgCATctataacaagaaaaacatgtttttttcttaaaaaatatatttgtcgtcactttgtttgtttgttttaaaatacaaaatactgtttaattGCAATATGAGCACAGGTCTACATCTGCCTGTACTACCTGTTGAAAACAGTAGGAGCTCAGACTTTACAAAAACAGTTATAAATAGTGTAAGGGTCTGCACTCTGAAGGTAGCATTCTCACAAAAatcctctctcacacacactgacacacaaacccCTCAGGAATTGGTAGGTCAAATCCTTATGGTAAATATTCTGCAGGAGTAACATCAGGAATTCCATTGAGAAAGGCTCTGCAAGACCCCCCCCACTACACCCCCACCTCTTCACGGGACAAAAGCAGGCTTCATGCGCTTACTATTACAACTGCATCTGTAACACAAGCaatgttgtatgtgtgtgtatgtgtgctggGGATCTTTACAGctctatgtaaaaaaaaaagtaaattccTCCTTAACTGATTTAGACATGACAAAACAGGTgataataaaatgctttaacGATCAGTTACCATGGGTGTGTTGCTCTACTTAATGATGCAATAAACCACATAGCAGACAGGATGAAACTTAAATAACTCTATCTAAACTCTTAAATCTGGATCAAAGCAAGATGGCAAACCTgggaaaattaataataataatattaagaagaagaagaagaattgaTGTGATGTAACACAGTTTTTTTGGAGGTGCTGTGATAGGTGTAATCAATTTGCACAGACATCTGTGTGGTCCGCACATGGTACACATCACAAATCAGAACAACTTTGGCTTCAAACAGCTTAGtctctgcagcatttttttaatttagtgtagTGTAAAGTGTAGACATACATGGGTTGTGGGCTTgtagatttaaataaactaacaaagcaacacaaataaTGCTTATATCTTCTTAATGAAACcagttatataaaaatacatctgcTTATATTATGTACATGTTTTACATGTCCTATATTTGTAGTAAGACTTCAAAAGCCAACACTTAACaataaaattacttttcatttttattattatttcttattaggTTCCTTATTTAGAATCACTCGCATTTAAATTGGCAGCGTTGATGGagtacaaaatattataaaaacattccatatttgttttatgcttaCTCCTCCTTAACCAGTGGTGGTGGGGTTtgcattattacaaaaaaagagaacaatGTCCAGGTTCATCAAGAGAATCCTGCTTAATAACTGAGGTATAGAACTTACAATACTGTGATATTTGCATTCAGTTAGAATTAGAAATTACATTTAGGGATATTGCCTTTACTTGTGCATAACACAGCATGTCACTTCTACCATCACCATTTGCAAAGAGAGTTTTAAAGTGGTCTGCAAAACTCAGCCATTCCTTTCAAGCACATTTggtaagaaatacaaaatacagctaTGAGAAgctaacatttatatatatatatatatatatatatatatatataacattttttcttgtaaaaatgcTTGCTACCTGATATTCCGGACTCCAGGTttaatgtttgttgttgttgttcatttaaAGAATAAGATAATTGTCATACTAAAACATTGTATCAGCACAATACTCCAGTTTCTTCAGGGGAATGGGCCCATGGGCCCCAGTGCATCTGTCCTgagattaatttaatgtgtttttttacaccTTATAATACTATACTCTTTCACACATAATTCCTAATTTGGGTGATTTCAAGCACTATCCTTATCTGTTTGAGCCCCAGAAttagtcaaaataaaaaagtatcaAAGTGCTGAAAAGACAAAGCTGCCCTATTTCTACCCATCAGCCCCTGTAACTTGCATTAAAAAAGTAACCTTTCTGTCACTATATTTTGCAGAAGCAGTGATGTTTACAGCTGGCTTATGTACTTTGAATGAGCTGCACAGCAGAAATTACTTGGAAACGTGTGGAGTTAACAGTCTATCAGGATGTAGCTTTTattagtatattatagtatagtatatttaCTAGtatattctggaaaaaaaaataatataatagatAGACTCCAGGCCAATGCAGTTTATAAATTCAAGACAGGTAATATGTGGATTTCTCCACAGTCATTATGGAGCCCATCCTCCTAAGCCTTAATAATAAGCTGGACTGTTTTGGCAGTTTAGTttataaatcaatgttaagGGTGTGCTTCAAGAAGAATCACAATGCAGTGGGATAAGTAAGTAGGTGGACTATTGCCAATGAATATTAAAAGGCTAAAAGTAGGCTGACTCAATTTTGTCTTTAATCCTTAGGATTCTGCCCAACCGTAAGATCTGCTCAGTGCGCACCTGTGTCACAAAACTTGGAAAGGGGACAAATTAACAATGATAATTCAGCTTTGAAGATGACTGTCTTTCGCTTAGAGACGGACGGACAGAGAGGCTTATTTTGGTTGTTAGGAAACCCTATTCAATACCCTACACCCCAGGCAGTTGATCAGCTGTGCACCAACCCTTCAAATCATTGGCGAGCCTTCCACATTATTGGTGAAGCCCCTAAATCCTCCACCTCTTTCTGAACCCCCAGCAGCTCTACAGCGGGATGATGTTTCTACACTGGTACTAAAGGAAGATGAAAGATATTTTTCAGAAGCATTCAGGCATTATACAATGGACTCCCGGATGTTGCCTCTGGAAGCAGTTGCAGCGCTGTGCGGAGTGGACCGCAGGACAACCTCACTAGTGACCTCAACGGGGGCTTGTGCGCCGTAGTGTTCACTCATCTTCTCTGCAATCAGTCCTGCCTTCTCTGGagcctcctctccctctttgtCCGTTCCACCCTTGCCGTTGTGACGATACATATAAGAAGCTTGCTTGACGGAGCGCCTCAGCAGGTGTCGGCGGTAAGCCCTCTGGATGACACTTGCTGCCACCTCCTCCTGCTTCCGCTTGAGAGTGGTGGTAATGGGCTCGTAGGACACCTTGGAAGGATTGGCGGCCATGAATTTCTCCTCCATGCTCTCCTTAAGGGCATCCATTTCTCCTGAGTCTCCCAGGACCTCTTTGGTCAAGGCAAACAGGATATCCAGGCAGTGGATTTTGTCTCCAGGCACCATGGGAAGGTCCAAGGATATGAGTTTGATTTTGTTGGGCTTTGGTATCTTCAGAGGATCCTGCAAAGTGTCACAGAAATCTGAGAGTCTGCTGTACTCGATGAACTGGGTGGCGTCAGGGTCGAATTTCTCCCAGGTCTCGTAGAACATTTCAAAGTCATCCTCGCACAAGGGCTCACCGCTCTCCTCTGTGGCCACGTTGAAGTTCTCCAGGATGATGGCAATGTACATGTTGACCACGATGAGGAAGGAGACTATGATGTAACTGCAGAAGAAGACAATGCCCATTAATGGGTTGCCACAGTTGCCCTTGATGTCGGTGCCAGGGTTCTGGATGGTGGGGTCACAGTCTGGAGGCTCGCTGTTGAGGATGGGCAGCAGCAACCCATCCCAGCCAGCCGATGTGGTGATCATGAACAGGCAGATGATGCTGTTCCCAAACGTCTCAAAATTGAAGATGTCATCAATGCCAGCTTGCTTTTTGACATAGGCAAAGTTGGCCATCCCAAATATAGAGTAAATGAACATGACCAGGAAGAGAAGCAGGCCGATGTTGAACAGGGCGGGCAGCGACATCATCAAGGCAAACAACAGGGTTCTGATGCCCTTGGCCCCCCGAATGAGACGCAGCACACGCCCGATCCTGGCCAGTCTGATGACACGGAACAGCGTGGGAGAGACAAAGTATTTCTCTATGATGTCTGCCAGCATGATACCTGAAACAAAATTGATGTACAATTGTAAAAGCAAAC

Function

GO:

id name namespace
GO:0051128 regulation of cellular component organization biological_process

KEGG:

id description
ko04514 Cell adhesion molecules

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18958 lncRNA upstream 64955 28160665 ~ 28160887 (+) True G15253
TU18928 lncRNA upstream 106193 28118543 ~ 28119649 (+) True G15226
TU18926 lncRNA upstream 108652 28116918 ~ 28117190 (+) True G15224
TU18886 lncRNA upstream 233050 27992588 ~ 27992792 (+) False AMCG00016707
TU18885 lncRNA upstream 233560 27992062 ~ 27992282 (+) False AMCG00016707
TU19065 lncRNA downstream 204005 28434984 ~ 28435256 (+) True G15328
TU19066 lncRNA downstream 220325 28451304 ~ 28451616 (+) True G15329
TU19084 lncRNA downstream 494508 28725487 ~ 28729054 (+) True G15346
TU19089 lncRNA downstream 526870 28757849 ~ 28761192 (+) True AMCG00016731
TU19174 lncRNA downstream 733365 28964344 ~ 29039663 (+) True G15417
AMCG00016720 mRNA upstream 44804 28154762 ~ 28181038 (+) True AMCG00016720
AMCG00016711 mRNA upstream 135662 28073595 ~ 28090180 (+) True AMCG00016711
AMCG00016708 mRNA upstream 174811 28040024 ~ 28051031 (+) True AMCG00016708
AMCG00016710 mRNA upstream 197568 28006284 ~ 28028274 (+) True AMCG00016710
AMCG00016707 mRNA upstream 227065 27964578 ~ 27998777 (+) True AMCG00016707
AMCG00016722 mRNA downstream 49519 28280498 ~ 28286427 (+) True AMCG00016722
AMCG00016721 mRNA downstream 77623 28308602 ~ 28345826 (+) True AMCG00016721
AMCG00016728 mRNA downstream 427953 28658932 ~ 28660893 (+) True AMCG00016728
AMCG00016729 mRNA downstream 433835 28664814 ~ 28681501 (+) True AMCG00016729
AMCG00016730 mRNA downstream 451392 28682371 ~ 28718666 (+) True AMCG00016730
TU18924 other upstream 120131 28104737 ~ 28105711 (+) True G15223
TU18876 other upstream 347145 27872663 ~ 27878697 (+) True AMCG00016702
TU18835 other upstream 394148 27829268 ~ 27831694 (+) True AMCG00016705
TU18724 other upstream 605923 27613105 ~ 27619919 (+) False AMCG00016690
TU18717 other upstream 627194 27588479 ~ 27598648 (+) False AMCG00016691
TU19419 other downstream 1841959 30072938 ~ 30074896 (+) False AMCG00016772
TU19422 other downstream 1850275 30081254 ~ 30083528 (+) False AMCG00016772
TU19434 other downstream 1878620 30109599 ~ 30113284 (+) True AMCG00016770
TU19453 other downstream 2005475 30236454 ~ 30236841 (+) True G15659
TU19688 other downstream 2828361 31059340 ~ 31061145 (+) True G15855

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1445798 False 3625 TUCP 0.43 1 NC_048579.1 18576539 ~ 18580163 (-)