RNA id: TU19002


Basic Information

Item Value
RNA id TU19002
length 588
lncRNA type inter_gene
GC content 0.53
exon number 5
gene id G15291
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28284362 ~ 28286445 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcttaattaaaatgttttaattgttggaacgacagaaaaataaataaaaacatcaggaAACTGCACATGGGGAACAGGTATTTTGTATCCATACAAAGTTGTTGAGGACGAGTGGACGAGGGATTTAAATGGGCATATGTGTTGAGGCCATGTGGGCCCCACCACGATGGATAAGTAAACATGGTTGCACTAGGGTGTTTCTTCTTCCTCCAGGcctTTTGGGGATGTGGATTCAACCAGCCATAATGTGTTTCACGAAAGCTTCATAGTTAATACAGCCATTGGCATCCTCTTGTCCTCCCAGTAATTGTTCCACCTcattctctttcattttctctcCGAGTGTTGCGAGGACGTGGCGCAGCTCAGCACCCATCACCGTGCCGTTCCCCTCCTTATCGAAGACGCGCAGCCCCTCCACAAAGTCCTCCATGGTGCCCTGGTCCTTGGACCGGGAGATGTGCTGCAGCATGGGGAGGAAGGTCTCGAAGTCCAGCATCTTGGTGTTCATCTCTCCTGTGGCGGTTCTGTCAAACAGCATGAAGGCCTCCTTGAACTCTGTGTTTGTACAAGAGGGGGACAGCGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18959 lncRNA downstream 123422 28160687 ~ 28160940 (-) True G15254
TU18956 lncRNA downstream 127162 28130012 ~ 28157200 (-) False AMCG00016712
TU18931 lncRNA downstream 226299 28003239 ~ 28058063 (-) True G15228
TU18901 lncRNA downstream 295933 27979546 ~ 27988429 (-) True G15206
TU18900 lncRNA downstream 295933 27982888 ~ 27988429 (-) False G15206
TU19067 lncRNA upstream 164953 28451398 ~ 28451632 (-) True G15330
TU19115 lncRNA upstream 395393 28681838 ~ 28682338 (-) True G15364
TU19116 lncRNA upstream 409253 28695698 ~ 28695920 (-) True G15365
TU19205 lncRNA upstream 779666 29066111 ~ 29066388 (-) True G15448
TU19222 lncRNA upstream 915459 29201904 ~ 29208644 (-) False AMCG00016740
AMCG00016718 mRNA downstream 11817 28264344 ~ 28272545 (-) True AMCG00016718
AMCG00016717 mRNA downstream 31178 28229775 ~ 28253184 (-) True AMCG00016717
AMCG00016715 mRNA downstream 63260 28215680 ~ 28221102 (-) True AMCG00016715
AMCG00016716 mRNA downstream 70056 28211844 ~ 28214306 (-) True AMCG00016716
AMCG00016719 mRNA downstream 74382 28196427 ~ 28209980 (-) True AMCG00016719
AMCG00016724 mRNA upstream 63924 28350369 ~ 28357780 (-) True AMCG00016724
AMCG00016723 mRNA upstream 99784 28386229 ~ 28387692 (-) True AMCG00016723
AMCG00016725 mRNA upstream 119276 28405721 ~ 28419910 (-) True AMCG00016725
AMCG00016726 mRNA upstream 191069 28477514 ~ 28492616 (-) True AMCG00016726
AMCG00016727 mRNA upstream 223381 28509826 ~ 28518748 (-) True AMCG00016727
TU18749 other downstream 855711 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 880440 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 914223 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 1005028 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1712721 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 495027 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 1915014 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2239847 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4136613 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4211062 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile