RNA id: TU19065


Basic Information

Item Value
RNA id TU19065
length 273
lncRNA type inter_gene
GC content 0.66
exon number 1
gene id G15328
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28434984 ~ 28435256 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTTTTTAAGTTAATCCACAGAGAActacattaaatacacattcgGGTACGCAGCGTGCACCATGATTAatagcaaaaagaaaacaactctGAAAACCGGGGGTAAATTCGGCCCATTATCCAAATTACCGACCACAATTATCTTATGTACAAGAAAGTTAGCTAATGTACTAATAAGCTCAGGCCTGGTTAAAAGCATCAGTGTTTATAAGTCAGATAGATGAATGGAAAAGTCCCAGGGTAATTCAGAAATAGGTTCAGCTACCTTACAG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18980 lncRNA upstream 204005 28225842 ~ 28230979 (+) True G15270
TU18958 lncRNA upstream 274097 28160665 ~ 28160887 (+) True G15253
TU18928 lncRNA upstream 315335 28118543 ~ 28119649 (+) True G15226
TU18926 lncRNA upstream 317794 28116918 ~ 28117190 (+) True G15224
TU18886 lncRNA upstream 442192 27992588 ~ 27992792 (+) False AMCG00016707
TU19066 lncRNA downstream 16048 28451304 ~ 28451616 (+) True G15329
TU19084 lncRNA downstream 290231 28725487 ~ 28729054 (+) True G15346
TU19089 lncRNA downstream 322593 28757849 ~ 28761192 (+) True AMCG00016731
TU19174 lncRNA downstream 529088 28964344 ~ 29039663 (+) True G15417
TU19179 lncRNA downstream 608461 29043717 ~ 29043973 (+) True G15422
AMCG00016721 mRNA upstream 89158 28308602 ~ 28345826 (+) True AMCG00016721
AMCG00016722 mRNA upstream 148557 28280498 ~ 28286427 (+) True AMCG00016722
AMCG00016720 mRNA upstream 253946 28154762 ~ 28181038 (+) True AMCG00016720
AMCG00016711 mRNA upstream 344804 28073595 ~ 28090180 (+) True AMCG00016711
AMCG00016708 mRNA upstream 383953 28040024 ~ 28051031 (+) True AMCG00016708
AMCG00016728 mRNA downstream 223676 28658932 ~ 28660893 (+) True AMCG00016728
AMCG00016729 mRNA downstream 229558 28664814 ~ 28681501 (+) True AMCG00016729
AMCG00016730 mRNA downstream 247115 28682371 ~ 28718666 (+) True AMCG00016730
AMCG00016731 mRNA downstream 308104 28743360 ~ 28759460 (+) False AMCG00016731
AMCG00016734 mRNA downstream 326768 28762024 ~ 28777025 (+) True AMCG00016734
TU18924 other upstream 329273 28104737 ~ 28105711 (+) True G15223
TU18876 other upstream 556287 27872663 ~ 27878697 (+) True AMCG00016702
TU18835 other upstream 603290 27829268 ~ 27831694 (+) True AMCG00016705
TU18724 other upstream 815065 27613105 ~ 27619919 (+) False AMCG00016690
TU18717 other upstream 836336 27588479 ~ 27598648 (+) False AMCG00016691
TU19419 other downstream 1637682 30072938 ~ 30074896 (+) False AMCG00016772
TU19422 other downstream 1645998 30081254 ~ 30083528 (+) False AMCG00016772
TU19434 other downstream 1674343 30109599 ~ 30113284 (+) True AMCG00016770
TU19453 other downstream 1801198 30236454 ~ 30236841 (+) True G15659
TU19688 other downstream 2624084 31059340 ~ 31061145 (+) True G15855

Expression Profile