RNA id: TU19115


Basic Information

Item Value
RNA id TU19115
length 501
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G15364
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28681838 ~ 28682338 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCCACACGTCCACTGGGGCTTTCCCGTCCACAGATCCTTTGTTTCCACACGGTACAGTGGAACAAATCACACGAACACAGCAAGCCTGCGAACAACCCAGCATCTCGCCTCCATTCGTGAGGGGCAATACGAAAATGCGGCTGTTACATAAGAGGGACCCATCCGCTGAATCCTGTAACACTGGGCACCGGTGGCTCAATTGTGGTACCACTGGCCCGAGCATTTGGATGCGCTGTGCCCACTCCCCCGGCTGCAGCCGAGCCCCACTCACCCAGCGCGCTGAGCTCCGGAATGGATTTGGCCACAGCCCTGCCGACGCCGCCGAGCAAGAGGACGAGCAGCAGCAAACGAGAGATGCGCAAAGGTGGCATTGTTACAGCTACATCACTGTTCCCAGCTAGGGAGCCATTCATCCATGTTGTTTTTTAGGGTGGTATAGAGGGGGCTACTCGGTGAACGCCTCTCGCTTGCCAACTCCCCTACACGCTCTCCCTTCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19067 lncRNA downstream 230206 28451398 ~ 28451632 (-) True G15330
TU19002 lncRNA downstream 395393 28284362 ~ 28286445 (-) True G15291
TU18959 lncRNA downstream 520898 28160687 ~ 28160940 (-) True G15254
TU18956 lncRNA downstream 524638 28130012 ~ 28157200 (-) False AMCG00016712
TU18931 lncRNA downstream 623775 28003239 ~ 28058063 (-) True G15228
TU19116 lncRNA upstream 13360 28695698 ~ 28695920 (-) True G15365
TU19205 lncRNA upstream 383773 29066111 ~ 29066388 (-) True G15448
TU19222 lncRNA upstream 519566 29201904 ~ 29208644 (-) False AMCG00016740
TU19300 lncRNA upstream 578974 29261312 ~ 29264667 (-) True G15525
TU19365 lncRNA upstream 1120557 29802895 ~ 29807133 (-) True G15585
AMCG00016727 mRNA downstream 163090 28509826 ~ 28518748 (-) True AMCG00016727
AMCG00016726 mRNA downstream 189222 28477514 ~ 28492616 (-) True AMCG00016726
AMCG00016725 mRNA downstream 261928 28405721 ~ 28419910 (-) True AMCG00016725
AMCG00016723 mRNA downstream 294146 28386229 ~ 28387692 (-) True AMCG00016723
AMCG00016724 mRNA downstream 324058 28350369 ~ 28357780 (-) True AMCG00016724
AMCG00016733 mRNA upstream 43271 28725609 ~ 28738603 (-) True AMCG00016733
AMCG00016732 mRNA upstream 99139 28781477 ~ 28785499 (-) False AMCG00016732
AMCG00016736 mRNA upstream 267112 28949450 ~ 28953796 (-) True AMCG00016736
AMCG00016738 mRNA upstream 339289 29021627 ~ 29024518 (-) True AMCG00016738
AMCG00016741 mRNA upstream 509396 29191734 ~ 29201720 (-) True AMCG00016741
TU18749 other downstream 1253187 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 1277916 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 1311699 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 1402504 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 2110197 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 99134 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 1519121 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 1843954 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 3740720 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 3815169 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile