RNA id: TU19116



Basic Information


Item Value
RNA id TU19116
length 223
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G15365
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28695698 ~ 28695920 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGTATCCGTGTGGCGTGCCAAGGCGCGGAGTTGGTGACGAAGCCCTGTTTGGACGCAGTGACGATGACCCAGGTCCCGGGTCGATACTGGAACGTAACCATGAAGACCCCATCGCTGCCCGCCACTCCGGATATCAAAGTGGAATGGTTCCCATAAACCTCCACGGCAGCGTTGGCCAAAGGTGAAAGGTCACTGTTGTCAAAAACCTGAACTCTAATCAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU19115 lncRNA downstream 13360 28681838 ~ 28682338 (-) True G15364
TU19067 lncRNA downstream 244066 28451398 ~ 28451632 (-) True G15330
TU19002 lncRNA downstream 409253 28284362 ~ 28286445 (-) True G15291
TU18959 lncRNA downstream 534758 28160687 ~ 28160940 (-) True G15254
TU18956 lncRNA downstream 538498 28130012 ~ 28157200 (-) False AMCG00016712
TU19205 lncRNA upstream 370191 29066111 ~ 29066388 (-) True G15448
TU19222 lncRNA upstream 505984 29201904 ~ 29208644 (-) False AMCG00016740
TU19300 lncRNA upstream 565392 29261312 ~ 29264667 (-) True G15525
TU19365 lncRNA upstream 1106975 29802895 ~ 29807133 (-) True G15585
TU19476 lncRNA upstream 1342870 30038790 ~ 30041875 (-) True G15673
AMCG00016727 mRNA downstream 176950 28509826 ~ 28518748 (-) True AMCG00016727
AMCG00016726 mRNA downstream 203082 28477514 ~ 28492616 (-) True AMCG00016726
AMCG00016725 mRNA downstream 275788 28405721 ~ 28419910 (-) True AMCG00016725
AMCG00016723 mRNA downstream 308006 28386229 ~ 28387692 (-) True AMCG00016723
AMCG00016724 mRNA downstream 337918 28350369 ~ 28357780 (-) True AMCG00016724
AMCG00016733 mRNA upstream 29689 28725609 ~ 28738603 (-) True AMCG00016733
AMCG00016732 mRNA upstream 85557 28781477 ~ 28785499 (-) False AMCG00016732
AMCG00016736 mRNA upstream 253530 28949450 ~ 28953796 (-) True AMCG00016736
AMCG00016738 mRNA upstream 325707 29021627 ~ 29024518 (-) True AMCG00016738
AMCG00016741 mRNA upstream 495814 29191734 ~ 29201720 (-) True AMCG00016741
TU18749 other downstream 1267047 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 1291776 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 1325559 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 1416364 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 2124057 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 85552 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 1505539 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 1830372 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 3727138 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 3801587 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile