RNA id: TU19365


Basic Information

Item Value
RNA id TU19365
length 848
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G15585
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 29802895 ~ 29807133 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTCTGTCAGATATTGAACTATTCGTCACTTCTCGCGTTGTCGCAGGTGGAGTTGATCATCTCGTAGGTCTGAGCTTCACAAAAACCCAGTACTGCGGAGGTCATTCATATTGTCAATGTAtgaatgtgttgtgttgtaatgaAATAAGGACTCGGTGTGTATATCTGAACTTAGCGAAACACTCCAGCAATAATATCCGTAAGAAAGGAGGAGATTGGGTTTCAGTTTAACGACGGGAAAATGTCAATGGATAAGAATGTGGAGAGAGGATCCTGGCAACTGCTTTTACCGGCGGTCTGGCGCTCAGTCTGCTCGCGTAAAGatGTGTTATTGCAGAAGCAGTAACACAGGTCGAGCCAAACAGATGAATGGACCCACAGCCATGGCTTGAGATGAATCCCCAGCCCAACTGTCTCCTCCCCAAGaacCAAGCAGTCCTCAAAAAGGAATCTCAATGACAAATGAAATCCAATCCACTTGGTTTTAAAAGCGCATCTTTGCTGAACCACATCTACCTTGAAACGCTCTCTCACCAATCTATGTCCCTGCAGCAGGAGTCTGTCGATCTCTTCGGGAGTGTTTCCTTTATCCTGGACTCGTACTCCACCACTGTGATCCCTACAAACTGACTTCACTGGCTCATGCAGCCCTGCATCCTCTCTCTAACTCCGGTGCTGTTTTCACAGTTCTGCAGCATTCCTGGCAAGTGATCCCCCCCTCTCTTTTAAGCGCTGAGGTGGGAAAGACTGGCAAGTTTATGGAGTGTAATGCGAGCTAGTGGAGGAGGAGCCCTGCAGGCCACATGTTGGTACCCTCCAACCAACTCTGCCTCATCAACTATTAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19300 lncRNA downstream 538228 29261312 ~ 29264667 (-) True G15525
TU19222 lncRNA downstream 594251 29201904 ~ 29208644 (-) False AMCG00016740
TU19205 lncRNA downstream 736507 29066111 ~ 29066388 (-) True G15448
TU19116 lncRNA downstream 1106975 28695698 ~ 28695920 (-) True G15365
TU19115 lncRNA downstream 1120557 28681838 ~ 28682338 (-) True G15364
TU19476 lncRNA upstream 231657 30038790 ~ 30041875 (-) True G15673
TU19477 lncRNA upstream 232662 30039795 ~ 30041875 (-) False G15673
TU19480 lncRNA upstream 235442 30042575 ~ 30044565 (-) True G15675
TU19499 lncRNA upstream 302320 30109453 ~ 30113284 (-) True G15690
TU19524 lncRNA upstream 397689 30204822 ~ 30205115 (-) True G15708
AMCG00016758 mRNA downstream 88430 29701416 ~ 29714465 (-) True AMCG00016758
AMCG00016751 mRNA downstream 152037 29632278 ~ 29650858 (-) True AMCG00016751
AMCG00016752 mRNA downstream 175463 29626884 ~ 29627432 (-) True AMCG00016752
AMCG00016750 mRNA downstream 288903 29510696 ~ 29513992 (-) True AMCG00016750
AMCG00016749 mRNA downstream 357327 29424596 ~ 29445568 (-) True AMCG00016749
AMCG00016762 mRNA upstream 86080 29893213 ~ 29904656 (-) True AMCG00016762
AMCG00016766 mRNA upstream 186397 29993530 ~ 29996857 (-) True AMCG00016766
AMCG00016767 mRNA upstream 201004 30008137 ~ 30013935 (-) True AMCG00016767
AMCG00016768 mRNA upstream 212382 30019515 ~ 30036042 (-) True AMCG00016768
AMCG00016765 mRNA upstream 260188 30067321 ~ 30071224 (-) True AMCG00016765
TU19143 other downstream 1017388 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 2374244 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 2398973 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 2432756 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 2523561 27268820 ~ 27279334 (-) True AMCG00016671
TU19522 other upstream 394326 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 719159 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 2615925 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 2690374 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 2690374 32497507 ~ 32498895 (-) False AMCG00016859

Expression Profile