RNA id: TU19480


Basic Information

Item Value
RNA id TU19480
length 1920
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G15675
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30042575 ~ 30044565 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTTCACAGCTGAGAAAAGAGCACATCATGAAAAGAAAACTCCCCAACCAAATAAGGAGACAGCGGTttctctttaataaaaaaaaatgactatgAAGCAGGGCGATCCCAAAACCCAGTTGCAGGAGGCCCCACAATGCACCCAATCTGCGCTGTGTGAACAAAGGGAGAGAGCTTACAAGCACCAGTTTCAAGTTCATAGTTTTCAGCCAGAGCATAAATGAAAGAGTAAGTGCACGGCCTTGCAAAGGACAGGTAGTGTAAAAGCACATCGCATTTGGAAACTAAGCCCATCAAGCTGGCAGTATCTGTATCGCTTTATTTACattgagagaaacaaacaaaacaaaaaagcacttaATAACCAAGAAAACACCCAACACTTCAAAAACCAGGAGCGCTACCATTCAAGAATCAGGAGAGGGAGTACATGAAAAATTCATAAAAGAACAGGAGAGGAAAGTACAAACAGTCCAATACTGAATGCAGAGGTCTATAAAAGACCGACTGGCAGCATTTTCTCTGTTCATTGTGTCTGAGGGGTTGCATCCCAGGAAGCCGTGGACTGGCTTTGTCTTGGTCAAGTTTCCCCTCCCGACCTGGGTACTCTCAAAACATTTAGCTCCGGGGGTAATTAAGCCACAGCCTGAGCAAAACAGTTTCCAAAGAGGTGTACAAAAATTCAATTCTACCgcttatacaaaaaaaaaaaaaacactatggCGTGGCTGGCAGGACAGTCAGGATAAATTGTCTGTTTTAAAAAGATAATATAAATGATATGcggtgtgtgggtgtgcgtgtgtgtgcgcgcacatATGTGGAAGCGAAGAAATACCCATATTGCATTCTGAGTGGGGAAAACAATgtaattgcaaaacatttttaccaaaagtaattatgtattatagACAATTAAGAGGGGGGGATGTTGTACACCAAGGCTGTCAGGAAAGCAATCCTTATTCCAATaagtgaagaaataaaatgtttattcaaatgaaaaataaaaataaaataaaactgggtgGGTACATTTTTAAGGGGTGACTGGGGTAAAATGAAAAGTTCActtcaacaataaaacaaaactcctGAAATCAAAACTAGAATTTGTCTTTAATAGAGGAGGCTCCTGGTTTGAAAACACCAGGATATACTGTAAAACAAGAGAATGGAGCTGCATGAATTTCCAAAAGCTtccaattatttcatataaatataaaacaaaacaaaaacgctgaaaaacaaatacaaaacaagcatTCTCTCTCCaaaaaacagaccaaagatTTAAAAAGGAGTACCAATTCTGtcagttataaaaaataaaatgacaataattGGGAGGAAACCCTCTCCTTTTTTAGATGTTATAGTTTAGAGAGAGAAAGCTTATTCGGTCTCTTTGTTCTTTTGTGTATTTCCAGCACTCCCCCCCGGCTTCCACAGATTATGTGTTGGAAGAGATCAGTCCATTTGAACTAATAAAGAGCATTCTCCAAAGGAACACCTGAGGTTTAAAATCCCAACacattttgtggtttgtttttaattctaaaattaaaaaaaaaaaaagcttgatgTCTCCTGTGCTTTACAATTCCTGCCAGTGAATCCCAACTCAGTCACAATAGTCCACTTGATCAGAAACAAACCAAAGGCAGCCAGTGGTCTCTGGCCATGATGACAGTACTTGGGATGTCCTGCAATGTTAGTACAGAGTCTCTGCGTTGCTGCTCCGTGGTCTCTTGATCTTCTCAATGTTTTTCAGGATCATGTCATGTAATGTTACCTGTGTTGGAAGAGATTCAATTCAGAGGCAGTTTCAAAGCTGTATCCTAGAATCCTACCTACTAGACTGAGGGGTAAGTATTCAGAACTAAACATCATAAACCAGTGTGTTCAGTAAACgtgaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19476 lncRNA downstream 700 30038790 ~ 30041875 (-) True G15673
TU19477 lncRNA downstream 700 30039795 ~ 30041875 (-) False G15673
TU19365 lncRNA downstream 235442 29802895 ~ 29807133 (-) True G15585
TU19300 lncRNA downstream 777908 29261312 ~ 29264667 (-) True G15525
TU19222 lncRNA downstream 833931 29201904 ~ 29208644 (-) False AMCG00016740
TU19499 lncRNA upstream 64888 30109453 ~ 30113284 (-) True G15690
TU19524 lncRNA upstream 160257 30204822 ~ 30205115 (-) True G15708
TU19527 lncRNA upstream 163122 30207687 ~ 30208537 (-) True G15711
TU19535 lncRNA upstream 188983 30233548 ~ 30236867 (-) True G15716
TU19567 lncRNA upstream 385364 30429929 ~ 30431998 (-) True G15746
AMCG00016768 mRNA downstream 6533 30019515 ~ 30036042 (-) True AMCG00016768
AMCG00016767 mRNA downstream 28640 30008137 ~ 30013935 (-) True AMCG00016767
AMCG00016766 mRNA downstream 45718 29993530 ~ 29996857 (-) True AMCG00016766
AMCG00016762 mRNA downstream 137919 29893213 ~ 29904656 (-) True AMCG00016762
AMCG00016758 mRNA downstream 328110 29701416 ~ 29714465 (-) True AMCG00016758
AMCG00016765 mRNA upstream 22756 30067321 ~ 30071224 (-) True AMCG00016765
AMCG00016774 mRNA upstream 44282 30088847 ~ 30099607 (-) True AMCG00016774
AMCG00016773 mRNA upstream 79286 30123851 ~ 30139691 (-) True AMCG00016773
AMCG00016775 mRNA upstream 117228 30161793 ~ 30174288 (-) True AMCG00016775
AMCG00016779 mRNA upstream 171679 30216244 ~ 30223409 (-) True AMCG00016779
TU19143 other downstream 1257068 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 2613924 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 2638653 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 2672436 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 2763241 27268820 ~ 27279334 (-) True AMCG00016671
TU19522 other upstream 156894 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 481727 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 2378493 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 2452942 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 2452942 32497507 ~ 32498895 (-) False AMCG00016859

Expression Profile