RNA id: TU19522



Basic Information


Item Value
RNA id TU19522
length 893
RNA type TUCP
GC content 0.45
exon number 1
gene id G15706
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30201459 ~ 30202351 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTCTATGTGTGTTTACTGCCTCCCTTCCCCATAAGGCAATTTTCTGACTGTTGTGTGTGAATCAGATGTCATTCTAATGAATAGCATATGTGACAACTGATTTAAAACCTCAATTTTACATTAGCAAATGACAGTAATACACTGAATGGGAATGCACTGAAGTTCTCATAAGGAGACGAGAGGTGGCTCAGAAACTACAGGCTGACAAGGTTACGCAGTATGCGTGCTAAGTGCTATCACAAGCCACTTTGTGCCAATCAACTGAGAGGAGCATTCAGCCCCTGATGAGGTAGATATCCAATGaaaatttaacaaaatgatCTGTACTATCCAACCCCCTATTCATTCTGCATTCACACCTTCTTAAAACTAGGCAAAGTTCATTGCACAGATATTTCATGAAGATAAAGACACCAACAGACACTGAACTGAGACCCAGAACCCACAGGCTGCTTGTAGACGATACCCGTTCCAGTGCGTCAAGCGCAGCCCTGGACTGCCAAATCACAGCACAGCGATCCTGCACGCTGGGGGCTCCTACCTGCTTATGAGCGTGGTCGTAGGAGTTGATGTGATTGTCAAACTCCTGGTGTTTCTGGTACTGCTTGTCGCAAAGCTCGCAGTAGAAGTTGGCTCTCAGGTCCTCCAGCGCCTTGGCTATGgccttctctttctctgcatAATCCTGGAACACCGCGAGAGAGTGAAGGTGAGCCCGGCACAAGTTAACGGAGATTTTCAAAGCAACATTTCACAAGGTCATCTTTTTCTCAGTGTATCaagtctaataaaaaaaaaaaaaaaggggcgCACATCCTACATAGGTGGATACACGCAGACAGATCGGCATTCGTTTAGAACTGCAGTTGACACCGGGAGTGATTTGAGGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU19499 lncRNA downstream 88175 30109453 ~ 30113284 (-) True G15690
TU19480 lncRNA downstream 156894 30042575 ~ 30044565 (-) True G15675
TU19476 lncRNA downstream 159584 30038790 ~ 30041875 (-) True G15673
TU19477 lncRNA downstream 159584 30039795 ~ 30041875 (-) False G15673
TU19365 lncRNA downstream 394326 29802895 ~ 29807133 (-) True G15585
TU19524 lncRNA upstream 2471 30204822 ~ 30205115 (-) True G15708
TU19527 lncRNA upstream 5336 30207687 ~ 30208537 (-) True G15711
TU19535 lncRNA upstream 31197 30233548 ~ 30236867 (-) True G15716
TU19567 lncRNA upstream 227578 30429929 ~ 30431998 (-) True G15746
TU19678 lncRNA upstream 796283 30998634 ~ 31002128 (-) True G15845
AMCG00016775 mRNA downstream 27171 30161793 ~ 30174288 (-) True AMCG00016775
AMCG00016773 mRNA downstream 61768 30123851 ~ 30139691 (-) True AMCG00016773
AMCG00016774 mRNA downstream 101852 30088847 ~ 30099607 (-) True AMCG00016774
AMCG00016765 mRNA downstream 130235 30067321 ~ 30071224 (-) True AMCG00016765
AMCG00016768 mRNA downstream 165417 30019515 ~ 30036042 (-) True AMCG00016768
AMCG00016779 mRNA upstream 13893 30216244 ~ 30223409 (-) True AMCG00016779
AMCG00016780 mRNA upstream 34623 30236974 ~ 30241569 (-) True AMCG00016780
AMCG00016794 mRNA upstream 262806 30465157 ~ 30467804 (-) True AMCG00016794
AMCG00016792 mRNA upstream 348777 30551128 ~ 30557792 (-) True AMCG00016792
AMCG00016793 mRNA upstream 355905 30558256 ~ 30563594 (-) True AMCG00016793
TU19143 other downstream 1415952 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 2772808 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 2797537 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 2831320 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 2922125 27268820 ~ 27279334 (-) True AMCG00016671
TU19613 other upstream 323941 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 2220707 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 2295156 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 2295156 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 2973725 33176076 ~ 33178883 (-) True G16356

Expression Profile