RNA id: TU19678


Basic Information

Item Value
RNA id TU19678
length 3461
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G15845
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30998634 ~ 31002128 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGCCTTGTATGTGCTTATCTAGGGCtgtgttaatgtaatattttcagtCAGACTTCTTCACCACTTACTTTACAATTCTGGGAAATTTCCATTATCTCAATCCATTTATATGTGTGCTTCATAGtggcattttattaattggaaCTAACAGCTGTTTTTATTCCCAGCTTAGTTCCAGTTataattttataaacaaaactgGGGCTTTTGTATGGAAATGGCGAATGAGTAGCTGAACAGCAGCATGCATGTAGCCACTTGTGTCCAAAACAAAATGGTCAGCCAGCCAACATTGCCTGTTGTaagccattttattttacaaatgtaccaAAACTAATCCCATgtttcaatatatacattttcataaaaaagaaatatataagctttaatgaaatacaaaacatgcaaaattCAAAAAAATTCCATGCTGTATTTTAAAGGATATTGCTTGTCAGAACCATGTCTCTACCACAAAAATACCCACATTATACCAAGGCCGGCCAAAAGTACTAGATACATTACTgtgttaaaaacacacaaaatcaagTGTTCTGACAATTGTAAAGAATCTAGAAATGACCTTTCACAAGGCCTAAGCTGGACCAGGTTATTTTGCCGTTCTAGTagttgcatttttgtttatttttttggcgATAGTTCTAGTCTGTCCAGATACCCCCTGatgtttttcatggtttaaaccaacaatgtacaaaaaatacactgaaacctCCACAGATTCTCAAAATTATAGTTTTCACCCAGATGCAATCAGtacatgtaaacaaaaaagagaatTGCATATGCTTTACTTTAAAAgtataaagaattaaaaatcCAAAAAAGAAATAGGCtataacacaatttatttttgtcttgctttGCTCATTACTCCATAACACACTACCCTCAAAAGGCAACTGCAACTTAAATTtgatcaataatacaaaatgatgggaatgaaaaacaataaatgcagaGGATGCTTCCTGTATATTTTCAACAATTCGTACCAGAACCAAATTACTTACCTGATagatattatatacagtacatcatTACTGTAACtgaatttatacatttgtttcaatTGCAGCAAATGTATTAACTGACCAATGCATTATTGTCAGGCTATGGGCTTCAGTAGGGAAATGGTTCTTTCAGTGCAGGCAATCTCACATTGAGGATTACTCAGAAAGCATAATACATAACCTTAGAGAGCAGAAAACAAGTCCATCAACTTGTTCATCATaagtataaaacaaattctAAATACCAACAAGAAGCAAAAAATGCTTGAATGCCATCtttgaaatacaacaaacaGTAAAGCCTAGAGCAACTCTGACAAATGGGAACATCCAAGTGCTCTTGTTTTTGGaacactatatataaaaaaatactttataaactCAGCCTCCTCACATGAAGcctttaacatttatttaagtgaTGTAAAAATGTGGCACCATCAAAAGCAGATGCCATCTAAGGAAAGGATTGTGTGCTGTTtaaagcatttgaaataaaaaaaactcatagCAAATGTGTTAGTCATTAATGGCAGAAATGTTAATTGTCATTAGATATCCAGGAATTGCTTTGGTATATGTATAGTACCTCACTACCTTGAACTGAAATATGGGCAAGATTTTCCTTTTCACAAGGGTATATTTAAAGACgtatacatttaattagtatttttaaatattgttttgtataccCAATGCcaaatcagtttaattataGATGTACCCTTGGTAATATTTGAAGGCATCTGGCATATTTCAGATTCGCAAAGCACTGCTGCAGATCATATTGATTGATGTAACTGATCAAGTAACTTGTGTCCTTGCAGACACATACAAGCAGTGTAGAAGAAAATACTCCAATCCAATGTTGGGTTTAAGTGCATAACAATGCTGGTTGGTCGTAGAAATGGTAACAAGGCTTGGCAGTGCTTTCATTTTAAGTAGCATATGGTGATCTCTCCGAGCTGGAATGTTATTTTTGTCAACCATATGATTCTGCAGGGGTACAGTTTCCTCAACATTACCATCCTAACCTGAAAAGACTACATTGAGGTCAAAGGTCTACAAACATGATGTGCAAGTTCTCCATGGCTCCTGTGCATAGTGGAATAAAAATGGCTTAGATTCCCAATTAGTCCTGCCATGTTTCTTAATTACAatcacccAGCATCACAAAGTCCCGCCATACTCATATTAGAGCAGTTATAGCAAGGTAAACATCACCTGGAATTATATAAATGCAagctagaaaaacaaaaaaataaaaacaaaagtggttcttaattaacattttgttcaCATCTTATCCCTAAAGCAAACTGTCAAGCCTGGTCTCCTCCCCAAACCCTTCAATGAAACTCTGAGATGCCATTTTTGGGATAAGAGCTTACAGCCCCACTGACAGGCAAGATAAAGGCCTGCCTGAATTCCCCCttcaagtacatttaaaacatgtaaaatgtaaagacCATTCAGTATCACTTTAAACCTATACAAACCCGTTCTAATTGAATGATGCGATTCCCCAATTTCTTCAAAATTGTCATTTTCAGCACCAATCACTGGTTACAGGATCACAAGTCTCTTCCCAAGCTGAAATTGTGTTTTACTCTGCCTTTTCAGTAGGCTAAACAAGTAATCCAGGTTTATATAGGCTGAGCATGTGATTTgcgcacatttttttttatttttaactgtataCGTGTCTGTGGAATGTAGTTATAAGGTTCAGATTGGGAGAAGactttgcaaatgaaaaaattGGATAATTTTCAAATAACTTCCTTTGATTTGAGTGATACGGGGAGAATCTCTTTATAGATACCCTTGCCTCTCCAATCAATAGTTTACTAGCCACTACGGTTGTGGGGGGTGGATATGCCTCAATCTACACAGGGCCTTCCCTGAGTTTCCagtgctatcctatcaataaaaaaaatatatatatatattatataaattgtattagcTGATGTTCCTTCCAGTTCGGTACTTAAGTCACTAAGATTTCGGCTTTGAACAGCATGACCCAAATTGAATTAAACTCCTTAAGGAAAGTCATTGCTGTACCATCGAGAACAATATTGCAAAGACAACAGGTTGCCAAGAGCTAGAGAACGTCACAAATAAGGCACAGCTTTAAAAAATTTACCATAAAGTCACAGTCAATTCACAGTTTCCCCATGGCTGTCCAATGCTTATAGCATCAAGTTACGGTGATTTGCCATAGTTTCGCCATGCTTTACCACAGAATTATTTGATTTTCCATTCTTGTACCATGGTTGTAATGTGCTTTACTTATACACTGCTGTGCTTTTACCATAGTATACCACAGTAACATTTTGTAAGCATGGTACAGGCGGCAGAGACTGGCTTTAAGTGAGACGAATTCCAAGGACTTGCTCCAGTTCTTGTCTGCGTTGCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19567 lncRNA downstream 566636 30429929 ~ 30431998 (-) True G15746
TU19535 lncRNA downstream 761767 30233548 ~ 30236867 (-) True G15716
TU19527 lncRNA downstream 790097 30207687 ~ 30208537 (-) True G15711
TU19524 lncRNA downstream 793519 30204822 ~ 30205115 (-) True G15708
TU19499 lncRNA downstream 885350 30109453 ~ 30113284 (-) True G15690
TU19687 lncRNA upstream 30942 31033070 ~ 31033320 (-) True G15854
TU19697 lncRNA upstream 101251 31103379 ~ 31106792 (-) True G15864
TU19730 lncRNA upstream 170057 31172185 ~ 31176602 (-) True G15890
TU19778 lncRNA upstream 367952 31370080 ~ 31379449 (-) True G15927
TU19783 lncRNA upstream 378419 31380547 ~ 31383730 (-) False AMCG00016815
AMCG00016793 mRNA downstream 435040 30558256 ~ 30563594 (-) True AMCG00016793
AMCG00016792 mRNA downstream 440842 30551128 ~ 30557792 (-) True AMCG00016792
AMCG00016794 mRNA downstream 530830 30465157 ~ 30467804 (-) True AMCG00016794
AMCG00016780 mRNA downstream 757065 30236974 ~ 30241569 (-) True AMCG00016780
AMCG00016779 mRNA downstream 775225 30216244 ~ 30223409 (-) True AMCG00016779
AMCG00016801 mRNA upstream 978 31003106 ~ 31008426 (-) True AMCG00016801
AMCG00016800 mRNA upstream 10435 31012563 ~ 31015970 (-) True AMCG00016800
AMCG00016802 mRNA upstream 58223 31060351 ~ 31060686 (-) True AMCG00016802
AMCG00016807 mRNA upstream 175428 31177556 ~ 31183301 (-) True AMCG00016807
AMCG00016812 mRNA upstream 290154 31292282 ~ 31315388 (-) True AMCG00016812
TU19613 other downstream 469134 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 796283 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 2213127 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 3569983 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 3594712 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 1420930 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 1495379 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 1495379 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 2173948 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 2424360 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile