RNA id: TU19697


Basic Information

Item Value
RNA id TU19697
length 3388
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G15864
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31103379 ~ 31106792 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaagtttttgttttttttaattaacatgaaGGTCAGcaatactaaaacaaaccagGTGCTGATTAATGTTGTCATAGATAGcgagcagtttttttttatcgCCAATCATAAATACTTGAAAACGACAGCATTTCTCATGACAAAGATGCTTCATTATTTGGTACACGCATTTCTGTTTATATTGGTATTCTGAAATGATAGTGATTTATGAATTagaatatatcacattatttcagATATCTAAGAAAAAGCTATGTTATGCATTTATGCTTTGGTGATACACATATTACTATATGCACTCAGGTCTGAAAAATACTTTCAGAGGCTATATATTCacagttgtagttgaaagtattcacaccctacAAAATAGATAATAGATAATGAACAATATTATTGAACTAAATGAATTAGGGAAGAACGGTTTTAAATTAAGGATATAAAGACTTTCAAGTGactgtgtgtctatatatacagctctggaaaaaattaagagaccattgcaaaattatcagtttctctggttttactatttataggtatatgTTTGGGTACaatgaacatttctgttttagtctataaactactgacaacatttctcccaaattccaaatacaaatatgaatttaatggaatggctgccatacatgtagagatgctgatttaagacaaatttgcagtggtctcttaattttttccagagctgtatatatagacacatgtctctgtgtgtgtctatatatgcCATAGGTTCTGTGCTGAACCCCTACCCACTGCCCCATAAAAAACATCTGCTTTGAGCTTAACTGCAACAAGCTCTAAGTGACACCTAATTTCAGGATATGTCCCACATAACCAGAGATTAAACTATTATGAAATACCTGAAAGTAACATGAAGAAATACAAGACTGTTTTGgattaaactattaaactattttaaatactatattgggtttacatgcatacatatttaacaattgACTCATACAGTGTTCACAgcagtttattgtttgttagtttttttctaaaccaaatattattgtttgtattccCATAAATTCAGCATCAAAATCTTTGTACATTGAAGTGCACTTTAGACTAGCCCCAGGGAACACATTTTGTCCaccaaactaaacaaaaacactcttCTGCCAGACCCAGTTCATTTTGGTATTGCTGAAcatggaaacaaacaacaaaacaaaacaacacgaAAGAGGAGACAAATTAAAGTCAGAGTCCCTCTGTTTTCCCACCCAGtcaaaaagtaaagaaatacaaaaaagtgaagaaattataaaaaaaaaaagctgcagtgCTTTTAAATGAGCCTAATACAGTGCTTTGTTCTTCGACAATTACAGTAAGTGTTTAAAGGTGCAGGATTAAATAGGACAGTCACATTCAGACTCTATTGAATGAatgctaaaacaaaacaaacacaaacaccatgACTGTTAAATCACGGAGGAACCCACAAAACCTTTCCTCAAAAGTTGGCtaatttcttaaataaaaaagtagaaaaatatttcacacactctcataaagcaaagaaactttaaaaaggTACCCTTAGCCCTTGAATTATATTGTCCAGTTTTTCATTTCCCTGATGAAGTCTAGCAACTGCCAATGCAATGacaaaaaaaggtttttctTATACCACATTCAGGAAAGaagtttttttcctctctctctttcacccaTATACCATTTATTCACAAAACAGGTACTTTTATCATTTATAACTATCctcctaaaataaaatggcagtgATATGTGCAGTGCTTGGGTAACTAACTTTCATGAGGAAAGAGGGAATTGCATTTCCTACGGGGCAGTTCACTATATTAACATCATATTGTCACAGTCAATGATCCATGGTTGGATATTGAAATCATCCTCCGTTGAAAACACAACAGGAATGCTCAGTTTAATTATTACTAAACCAGGAAAAGCACACAAAGGTGAACATACTATAAATACaactttcttattttgtgtGCTTCTGTGTAGAAGTATGCGCTCAGAAtcaagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacaaagaGCCATAACAAAGCCTGCCAACAACTCACATTACATAACTGAGAATGAAAAATACTTGGGCCTTTTTGGTACTATGTGCCTTATCTGTTGAAGCAAACCCACTGGTTCACTGTAATTTGAAGTACTGGTTATTTGCTAGAATTGACAAATGTTGTCAGCAAGAGACATGaaagtggaaattaaaataatttggaaattgGATGTGGCTTTCCTGGAAAAGGCACATACATTCAAAAGGACCATAAGAAATGCTTTCAGTTCATCCTACTGTCTTTACATTATTAACAATCTCAAAGGAggaacaaactaaaaacatgttcattgttttatttggatCTTTGAAATGGATCCGCTTTTCTTCTCccagtaaacattttttttttctgactgatCTCAGTTATaggtacaaaatatatacatcttacAAATTCCCATACACAACATcataaattaagtattttatttgggctctctatgtagctgtaaatGTCCTTGCAGAATTAAATGtagttgtcttttttattcaaaatattctcCTATTCTTtactgacaaaataaatcttaaaagcAGCTTCTGAGTTTGCTATATAATTAAACTggttattttttcagaaattgtAGTAATTCGAGATAGTCTTCAATTATCCTTAAGACTTTAagagctggtttcacagacccagactagcactagtcttggactaccgCTGTTATTTTAGATCTTTTAGTAGTCCAAGGCTGGTGCTAATCAAAGTTTCTGAAAGCAGCTGTAAGAGTTAACTCACATCTTGGGAAATAATATTCCAGCTCTGTCACTCCTGACTGTTACTCTCCCAGGAGCcagagatgaaaaagaaaaggtgtgTTCAAAATGAAGAAATCCATGACTAAGGCTGTTGTGTACAAATTAACAGGATATGTCTCGTTTCTGGACATGAATACCTCTTGGGTCCTTAAACTAAGAATAAACTGACTTTCAttgtaataatgaaaaatgattgcttgtttaattttttcatcAGCTTAAATTCCTTAATCCCTTGTTCATTAGCCTGTATCACCACCCATTACCCACCCTCCCACCctctattattataatgttttacacCCGAGGGATGACATTACATTTGGCTACCAAGAATTGAAGAGAACCAGAACTGAACACAGCTCTTTAAACAGTCTTATCCCCTGCTGCTCCCCGATTGGCTCCAAGCTAGCAGAATCCTGagtaatgctggttctgattgGCTGCGCCGGTGTCACTCTGTGTTGCCACGGTATGTCACGTTTGTGAAGGTAGAGGTTGCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19687 lncRNA downstream 70059 31033070 ~ 31033320 (-) True G15854
TU19678 lncRNA downstream 101251 30998634 ~ 31002128 (-) True G15845
TU19567 lncRNA downstream 671381 30429929 ~ 30431998 (-) True G15746
TU19535 lncRNA downstream 866512 30233548 ~ 30236867 (-) True G15716
TU19527 lncRNA downstream 894842 30207687 ~ 30208537 (-) True G15711
TU19730 lncRNA upstream 65393 31172185 ~ 31176602 (-) True G15890
TU19778 lncRNA upstream 263288 31370080 ~ 31379449 (-) True G15927
TU19783 lncRNA upstream 273755 31380547 ~ 31383730 (-) False AMCG00016815
TU19800 lncRNA upstream 313952 31420744 ~ 31421968 (-) True G15947
TU19815 lncRNA upstream 370051 31476843 ~ 31481401 (-) True G15962
AMCG00016802 mRNA downstream 42693 31060351 ~ 31060686 (-) True AMCG00016802
AMCG00016800 mRNA downstream 87409 31012563 ~ 31015970 (-) True AMCG00016800
AMCG00016801 mRNA downstream 94953 31003106 ~ 31008426 (-) True AMCG00016801
AMCG00016793 mRNA downstream 539785 30558256 ~ 30563594 (-) True AMCG00016793
AMCG00016792 mRNA downstream 545587 30551128 ~ 30557792 (-) True AMCG00016792
AMCG00016807 mRNA upstream 70764 31177556 ~ 31183301 (-) True AMCG00016807
AMCG00016812 mRNA upstream 185490 31292282 ~ 31315388 (-) True AMCG00016812
AMCG00016811 mRNA upstream 229653 31336445 ~ 31337280 (-) True AMCG00016811
AMCG00016815 mRNA upstream 273854 31380646 ~ 31388268 (-) True AMCG00016815
AMCG00016816 mRNA upstream 294025 31400817 ~ 31403944 (-) True AMCG00016816
TU19613 other downstream 573879 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 901028 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 2317872 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 3674728 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 3699457 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 1316266 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 1390715 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 1390715 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 2069284 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 2319696 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile