RNA id: TU19778


Basic Information

Item Value
RNA id TU19778
length 4698
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G15927
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31370080 ~ 31379449 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttgttatgctttttattaattttggaaAACACGTAAGGCATATGGTAACATTAGGCAGAAAAGCATTACAGGTTCTATTTCATGTAAATAGCATTGGCACGACTTGGTCAACCCAGAGGCAAGCACAAAAGCAGCATTTTTCAAAGGGTttaaatacaaagtagaaagagtatgttattgtttttgaagcatcagtctgtaaaaacaaaacaacaaaatatataataaggaAAGACTGTAACTACAGGATATGAGCTCATACAATTATAAACCAGAGGCGTCTTAACcgtattatgatttttaaaatgtaatgtagatATTAAACCTCCAaaatgagtgagtgtgttttaGGTTATGTCTGCAAGACAGCAGAGAGGTCAGGGGAGGCACATCTTCATAATAAAAACCTTGTCCACATCAAAACAGAAccattttatgcatttattttcttgtatagtGAGTTTTGTGCCAGCCTATCTGATCGGGATTGGTCTGGATTGTAAATTTCAGTCCAAGCTAGTTTTTACCAGGATTTTGCACTAGACATGCAACCATATACGCACTGATTGAGATGAAACATTTGGGAGTTAGAGGCAGGAATGAGGTTTCAGTCTTGGATACAGTAACTAGGGATTATCCTGATTTTATTTCTCCATGGTAATGAACAGGCTGCTTCTTATTTAATGGCGTAATGACAGAAACCAGGTGCGTTTCAAACCTTGGTCTTTCTCCCACCACCATCACCCACCCTGTGTATTTAGAGAGgataacacaaaagaaaactggGGAGCGGATTGTAGAGAAACCTCATTCACAACTGCCATCTGAGTGAATATAATATTTGGCACATGACAGTAGTGGAGAAAAGGAGCAATATATTTGAGTAATACTAAGAATTTtgaacactaataataataataaaataaaccaaagaaaaatgtttaaaaataaacccagaTTAATTGTTCTGTTAATCATTACATGGCTTTTTGCAAGGAAACCTAAAGCCTTGTTATTTCTAGAATTTGGCACACTTGgtcacaaaaggaaaaaaacaactaaatgcAGCAGATCCCTGTAAATAACTTTGAACTTtaaacccttaaaaaaaaaaaaaaggtacaccATCCTTCAATTTAGCTTCTGTCACCAACAACATTTTCTACACAAACCATCACAGCTacgaaaaaaagaaagaaaagaaaaacaaaacaaaaaaactcgtAAGTGCAATAAGTTCAGCAAGCAGAGTGCAAAAATATCAATACCAACTGTTCTAACACAGGCAGCAGGGCTCAGGTCTGAGGAGCTAGACCAAGTGGGCACTAGTGTGTTGGNNNNNNNNNNAATGAGCACCTCCCAAAACCCAAGAGTAATTGACACACTCCAAGAGCAATTGCAGCACACTGTGGTTTAATGGTTAGACAGCTGGTCGACGTGCTGCCTGACTCGGCTGTGGAATTTGGGTCTGTAACACCATCACAGCTTGAGGAGGTGTCCCATTCGATAGAATCATAAGTGTCTGCAGTGCCCTCACTTCCTATTGGATCTGGCTCACTGGAAGGGTGAAAGGTCAGGAgatgaataaaagaaaagggaaTTTAAACCAGGGGAGTGGGGCGGgagaaaactaaactaaaacaggAATTTGAATGCAGTCTTGATTGCACTTGAGGGTCTCGCAGGCTTGGGTAAAAGGTTTCAAAATACTGTGAAGTTAGCAATTTGCATTTGACCATTAACAGGCATAGGTATGGCATCTTAATGACAAATTACGGATTAACCTCCACAAGTGGGTTTCCTTACACCCCTATACTATGCCACTAATGGTCATATACAGGTGCAAGTGCTTGAAATTCCTGGTCAAAGTCGAACTTGTCATTGGCGCTCAAAGCCGTGACCAACAAGAATCGAGAAGAGTTGAAAGTTCAatgatgggggtgggggggtggtcgTGTTAAATTGCCTGAGCCCTGTGTAGTAAAGCCCACACACATACTCGCACACCAACACACTGCAAATGGACATGTTTCCAGTCATACTAAGACAATaggcattttttttcccttccctctcTTCTTGAGAGAAATAAACTCACAACCTAGGCTAGTCAAAATGCTAACCCAGTGCTAACCCAGTCAGGACCCGAAAACAGACAGCCAAACCCGCCACCTCGCACAAAGCTCCATGAACACAACAGAAAACGAAACTCAATGGAACACTGAATGAAATGCTTGGATGCTTTTGCTACCAGACTTAAGGTTCCCCAAGGTCTTAATACACAGATGCTGAAACATCTACAGGCAGAGAGGTCATgaagtaatgtgtgtgtggcacGAAGGTATCAGAACACAGAAGAGGATGAGTGATAGTAGTCAGTCATCTTTAACCAACCACCAATTCCCCCAATTTCGAAATGGCTCAATTTCGTACCAGCAAGGTGGAGGCAAACAGACACAGTGGCTGACTTTGAACCCACTCAACAGCGGTAGGCAGAAGGTCAGGAGTGTCCTGCCCTTTGGGGAATCCGAGTCAGTGTCAGTTGATGACAGAGGCCaactaatacatatttaaagccCCATCCCACTTCCTTGACCAATACCTTCTTATTTTGGAAAATTACTTTCTAACTAATTATAACCAAGGGTGTGGCAATTACTTAAATTGACAGTAACATGCTCATCCCCAACCCTCTATTCCCACACAACTTTAAATGAAACATGCACCTTGGACACAAATTTGATTGGGTttcagaacatttgtttttattcatgtttattttgttgttgtagtagtaggcTTTGGCAATAGCGTTTCTCATTTTGGCACAAAAGAGAATGTGGAACAATGCTTGTGGCTTGGCTGGAGAGACTGAGATGGAGACAGAGGCTCAGAGCTCCTAATGATCTGGTTATGACGGCTATCGAGAGCTTTACAGTTTCTGACACTGCAGCCGCCTGTTGCTATGCCGACCAACTCCCGTTTGAGGGAGCGAGGGCGGGGAGGAGAGCAGAGAGACTGCTTGCCAGGAACTGACTTTCatcgccccccacccccacacacaggtcacaaatgacaaaataaaacagtcacAGTACTTTGAGTGATGAAATAAGAGAAGGAATGCTTGATATACGAGAAAAACCTCAAAGCATTGTAAATCTCTTAAATGTGACTTGACTAATGAGGTATTCTGCAGGTTATGAAAGtagatttccccccccccccccccccccttctctcacatattagagatttgttttcataacaGGATGAAATGTCAGCAATAGCCTCTTCATCATCTTGGCAACATGCTTGCAGGTCTACATACATTAACCAgctttaacttttattttttcattttgcatttaccGCTAGATACTGGAATGGCTGTGGCTTGGATGCTCATCTCTCAAATACTGATTAAAAAGAAGAGCATTACTCTGCCGTCTGTGCAAATGCAATGATGCAAATTCATTCTGGGTTTCTAACCAGACTGGTAGCAAATGCAGATCGCTCCGTGAATGGACGGATTTGGACAAGATTATACAATCAACTGGGGTAAAACAGGAATGGAGTGTGCAATGGTGtagcatgaaaaacaaatgtttcaaagcATGCAACTCAAAAGATGCTCACATTTTGCTGAAATGActaattcccccccccccccccatttacaaaaaggaaaaaaaaaaaaaaaaaaaattgtgctaCAAGACTAGAATctaatggagaaaaacaaaatacaaaaataatcctGGACACAAACCTGACTGTCAGTCTGCAGTGATAAAGGACAATGAATACTGTAAAGGACAAGAATTCTCATCATGCAAAACAGTGCCCTACGGTTATTAAATAGGTTTACATGCATGTCACTTATTCTTTAAAGCAGCAAAACCCTTTGCCACTGGCTCCCTTTAAGACCTCTGAAAACTGACATCAACACATCCACAACCACAAGGAAAGATTTCATAAGGATCTGTCAGAGTTGGATTTGGCAATGAAGCACACCGATTTCTGGGTTAGTGGGGGGACAGTGGTATTAAGTGTCTATTTGCGGGTCCTGAGCGTATCATCGAATCAATTCACACTCAATCACAGCCGTTTCAAGGGAGGGAGAagggtgtgtgtggggttggGGGGACATGGGGGCAAACAGGCATCCATTGCAGAGCAGTCATGCAGTCCCAGGTTGTACTATGAGCTCAGAATAGACGCATCCTAGACCAGAGAGGGACAGATCTGCAGGGGTAGCACTCTGGGTGATGGATACAGGGGGGCTCACAGTAAAGCCTGGGTTgagaagtggggggggggggggggggttgggtgcATGTCAGACTGCTGTGCAATCAGAGCCTGCTTTTCCACCCCTGCCACAGAAGACGGCTGCTGAGGGCCTGCCGGATGCCGCCCTAATTCTCCTCCTTCTTGGGctcctccttcttctcttcctctttcttgGGCTCTTCTTTCTTGGGCTCGGGAAGCAGGATGATTTTGCCAATGTTATGCCTCTCCTGCATCCGCCTCATGGCATCGCCCACCTGCACAAGCacagggagggaaggagaggggagagagggacacagagcaGGCAGGTAAGATTTACAGATCCTCTGGTCATGGCATTGTTACACTCCTTCCCCCACTTCCATCTTTTTTTTACCCCACCTGTAAAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19730 lncRNA downstream 193478 31172185 ~ 31176602 (-) True G15890
TU19697 lncRNA downstream 263288 31103379 ~ 31106792 (-) True G15864
TU19687 lncRNA downstream 336760 31033070 ~ 31033320 (-) True G15854
TU19678 lncRNA downstream 367952 30998634 ~ 31002128 (-) True G15845
TU19567 lncRNA downstream 938082 30429929 ~ 30431998 (-) True G15746
TU19783 lncRNA upstream 1098 31380547 ~ 31383730 (-) False AMCG00016815
TU19800 lncRNA upstream 41295 31420744 ~ 31421968 (-) True G15947
TU19815 lncRNA upstream 97394 31476843 ~ 31481401 (-) True G15962
TU19842 lncRNA upstream 109812 31489261 ~ 31489836 (-) True G15976
TU19848 lncRNA upstream 124630 31504079 ~ 31504548 (-) True G15982
AMCG00016811 mRNA downstream 32800 31336445 ~ 31337280 (-) True AMCG00016811
AMCG00016812 mRNA downstream 54692 31292282 ~ 31315388 (-) True AMCG00016812
AMCG00016807 mRNA downstream 186779 31177556 ~ 31183301 (-) True AMCG00016807
AMCG00016802 mRNA downstream 309394 31060351 ~ 31060686 (-) True AMCG00016802
AMCG00016800 mRNA downstream 354110 31012563 ~ 31015970 (-) True AMCG00016800
AMCG00016815 mRNA upstream 1197 31380646 ~ 31388268 (-) True AMCG00016815
AMCG00016816 mRNA upstream 21368 31400817 ~ 31403944 (-) True AMCG00016816
AMCG00016823 mRNA upstream 264407 31643856 ~ 31653933 (-) True AMCG00016823
AMCG00016824 mRNA upstream 278799 31658248 ~ 31674496 (-) True AMCG00016824
AMCG00016831 mRNA upstream 376086 31755535 ~ 31762700 (-) True AMCG00016831
TU19613 other downstream 840580 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 1167729 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 2584573 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 3941429 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 3966158 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 1043609 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 1118058 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 1118058 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 1796627 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 2047039 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile