RNA id: TU19800



Basic Information


Item Value
RNA id TU19800
length 1204
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G15947
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31420744 ~ 31421968 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACAAATCAGGTATTTTATTAGCTCTGCTGGAAGGTTTACTGGAATGAGAGTATACATGTATTCCTTCAGTTGACAACAGAAGGATGCCCCTGCCCTGAATGAGTTCCAAGCAAAAGAGCCATTATCCCTTCAGTGACCTTCAATGAGCAATTTGGGGTGAAGTGAGTGACACTGACAGAGCCTTTGTTAGCATCTGTATTCATCCGTTGATTCAGATAGGCTGTTAAATGCAGTTAGTTATTCatattcacagcattttattgaaaatgggTGGCTTTCAAATAGTTCAACAGTGCAGCCTGTGAAAGCGCCTGATAAGACACATGAACAAGAAATGCACTGAACCAGATGTGATGAACAATGttaacggggggggggggtttattATGCAGTTGAGCCGATGTTGGGACTATGAATATCGCAAACACTGACCTGCTGAGATTTTTGTACAGCAATCTTAAAAGGAAGGTTATTTATAGAAGGTGAGAAGACATTATCGGAATAACATTGTACATGGCCAAGAAAATATGCCCTCAACAtccttttaaagaaaacattcgAGTTCAGGTGTCACCTTAGGCTGTGAACTCAAGACAGAGGGCAGTTCTACACAGTTGAAGTGCTGGATTTCTCCCCAAAACACAGTTAGCAAACCTACCCACAAATTGCCaaatcccccaaaacaaaaaacaacaaggtaCAAGTAATTGAGTTCAAGGAGAATTTACCCTTGGAGGCAACTCTaatagaaattaattatttggcAAGGGAACAAATTCACCCAGCACCCTGATGTGCCCGTTTCCTTCCTGTCACACATACACgtttacacacagacacagaggttTGGGGCCTGGGCTCCAAGTGCTGCCTGGTGGATTGGTGACAGTCCCGTGCTAAGAGTGGCAGGAGGAGACCAGGCCCTAGGGGATGGGGAGGGCAGGGCGGGGGGTAGGATGTTGCTGGGCCTCTCACTGGGGCAGCTGCAGCAGGGTCCCCTGGCCGGAAGGCAGGTAGGTGACGTTGCGGGAGCGGGACAGCTGGAAGACAATGTCCTCGGCGGCCTCGAGTTTACGCAGCTCCACCAGCCCGTCTCCCGCCGTGGCCAGGGAGTTGGCAATCAGCAGGGCGGCCTGGGAGTCACCCTCGGCTGAGATGATGGTTGCCTGCTTCTGCTGCTCAGCCTGGGGGGGGGATGGAGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU19783 lncRNA downstream 37014 31380547 ~ 31383730 (-) False AMCG00016815
TU19778 lncRNA downstream 41295 31370080 ~ 31379449 (-) True G15927
TU19730 lncRNA downstream 244142 31172185 ~ 31176602 (-) True G15890
TU19697 lncRNA downstream 313952 31103379 ~ 31106792 (-) True G15864
TU19687 lncRNA downstream 387424 31033070 ~ 31033320 (-) True G15854
TU19815 lncRNA upstream 54875 31476843 ~ 31481401 (-) True G15962
TU19842 lncRNA upstream 67293 31489261 ~ 31489836 (-) True G15976
TU19848 lncRNA upstream 82111 31504079 ~ 31504548 (-) True G15982
TU19851 lncRNA upstream 106082 31528050 ~ 31528621 (-) True G15985
TU19880 lncRNA upstream 182638 31604606 ~ 31615213 (-) True G16004
AMCG00016816 mRNA downstream 16800 31400817 ~ 31403944 (-) True AMCG00016816
AMCG00016815 mRNA downstream 32476 31380646 ~ 31388268 (-) True AMCG00016815
AMCG00016811 mRNA downstream 83464 31336445 ~ 31337280 (-) True AMCG00016811
AMCG00016812 mRNA downstream 105356 31292282 ~ 31315388 (-) True AMCG00016812
AMCG00016807 mRNA downstream 237443 31177556 ~ 31183301 (-) True AMCG00016807
AMCG00016823 mRNA upstream 221888 31643856 ~ 31653933 (-) True AMCG00016823
AMCG00016824 mRNA upstream 236280 31658248 ~ 31674496 (-) True AMCG00016824
AMCG00016831 mRNA upstream 333567 31755535 ~ 31762700 (-) True AMCG00016831
AMCG00016833 mRNA upstream 355444 31777412 ~ 31801252 (-) True AMCG00016833
AMCG00016835 mRNA upstream 381069 31803037 ~ 31818127 (-) True AMCG00016835
TU19613 other downstream 891244 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 1218393 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 2635237 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 3992093 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 4016822 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 1001090 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 1075539 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 1075539 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 1754108 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 2004520 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile


TU19800 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
End of interactive chart.

TU19800 Expression in each Bioproject

Bar chart with 7 bars.
TU19800 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
End of interactive chart.