RNA id: TU19848


Basic Information

Item Value
RNA id TU19848
length 470
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G15982
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31504079 ~ 31504548 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttctattattgatGGCTTTATATTCCAAATACATCCTTCACTGTGAAGACCAATATACATATAGAACAggtgtttaaaaacagaaatgcttgCATACAAGATAAAAACTCTGGATGAACAGATAGGAGTCTAAGGAGCATGCCATAGACACACTGTCAGGGAAGAGGAATACACATACAGGAAATCAGCCCAACAGTGACAGATTATTGCCATAACAAttgtacaaacatttttttttctaaaattcaCAGACCCAAggattcaaaaaataaaataaaaaacaaaggaaacataCAAGAATAGAGACAAACTCATTGAGACAGCttcacattcattttacagACTTTAGTTTACGAATTTCCCCCTCCTGTGAAAAATctttaacaaatgtttaatagcaAGACAAATGCCTTTGGTTCCTCTTAAATGAAATGGTTTTCATTATATGTTAATTCCAAAATTGACATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19842 lncRNA downstream 14243 31489261 ~ 31489836 (-) True G15976
TU19815 lncRNA downstream 22678 31476843 ~ 31481401 (-) True G15962
TU19800 lncRNA downstream 82111 31420744 ~ 31421968 (-) True G15947
TU19783 lncRNA downstream 120349 31380547 ~ 31383730 (-) False AMCG00016815
TU19778 lncRNA downstream 124630 31370080 ~ 31379449 (-) True G15927
TU19851 lncRNA upstream 23502 31528050 ~ 31528621 (-) True G15985
TU19880 lncRNA upstream 100058 31604606 ~ 31615213 (-) True G16004
TU19907 lncRNA upstream 189268 31693816 ~ 31697608 (-) True G16024
TU19910 lncRNA upstream 194588 31699136 ~ 31699400 (-) True G16026
TU19936 lncRNA upstream 214352 31718900 ~ 31720036 (-) True G16043
AMCG00016816 mRNA downstream 100135 31400817 ~ 31403944 (-) True AMCG00016816
AMCG00016815 mRNA downstream 115811 31380646 ~ 31388268 (-) True AMCG00016815
AMCG00016811 mRNA downstream 166799 31336445 ~ 31337280 (-) True AMCG00016811
AMCG00016812 mRNA downstream 188691 31292282 ~ 31315388 (-) True AMCG00016812
AMCG00016807 mRNA downstream 320778 31177556 ~ 31183301 (-) True AMCG00016807
AMCG00016823 mRNA upstream 139308 31643856 ~ 31653933 (-) True AMCG00016823
AMCG00016824 mRNA upstream 153700 31658248 ~ 31674496 (-) True AMCG00016824
AMCG00016831 mRNA upstream 250987 31755535 ~ 31762700 (-) True AMCG00016831
AMCG00016833 mRNA upstream 272864 31777412 ~ 31801252 (-) True AMCG00016833
AMCG00016835 mRNA upstream 298489 31803037 ~ 31818127 (-) True AMCG00016835
TU19613 other downstream 974579 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 1301728 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 2718572 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 4075428 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 4100157 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 918510 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 992959 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 992959 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 1671528 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 1921940 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile