RNA id: TU19880


Basic Information

Item Value
RNA id TU19880
length 1915
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G16004
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31604606 ~ 31615213 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCAATGCAGGAGGTGAGAGGCAGCAGTGGGGAAATGCAGGAAAAGCCTTTGTGAGCTTGGGATTCTTTCACTGCAGCACTGAGAAGGCGATCACTTACCTCCATCCTGTCATCAGACACGGGCTCAATCCCGTAGGAGAAGACCCCATCTGAGAACATGCCACTGGGGAGAAAGAGGAGTGAGGGGCTGTCAGTTCAGTTTAGTACAGATTGGTTCATTCTACACAGGCAGCAGGAGAGACACAAGATGGGAACTGAGGAGCAGACGACTTAACCCCACCAGTCCTCTCAGTCCTGTGCTCATTACGGAGAGAGGGATGCTATGTTTTtagtacaataaataatgcagcaaCGCAAGAGCTCTCTGTGGTCCCCCGGGAAGACAGGGACTAAGAAGGGAAGTGAGCCGGTGAGGGAGTGGGGGTATAGAGAGCGCGTGGTGGAGGGGTGAGTGTGAGAGAGCAAGACTACGGACCCGGGCTGGTGGGGCATACATGATGGTACAGTGAAGCAGTTGGGAGGGGCTGTCTCCTGCTTTGTTGTATGGATAAACAGATCTTGTTCCTCTTCAATCTCCAATTATCCTCCCGATTGAAAAGCCTCAGCCCAGTGAACTGAGCTCACCGCAACAACCCACCAAAAAGCGATGAAGAGTACATGCAAGGGTCCTCCGAGACTAACACCTCCGAGATATCATCTGCTTTTTGTTCTGAAGGCTCAGAGCACAACCAGCTGAGTGAAATCATACGAGAGAGGACTCATGTGCAGGACACTGCTCTCAGCCAGCAATACAGGGGTCTATATTGCATAATCATAGTAACTACACACATAATGGCAATGGACCTAATGTATCAATCTATAATCAAATTCAATCAATCATTTCCAACCTATGATCTTTGAAAGCTAAGCTATGACCTCAGAACACACTACCAAATGAACACAACTCTCGGACAAGATTTTTGCCTTAATGCGACGAATGACAGTAACAAGCTTTGCAGATGTACTTACTGGTTTAACTCCAGGTCTAGGATGAAGAAGGTACCGAAGGCCTCCACCAGGAAGTTGGCTTGAGCGAGGTGAACAGGCtgcaagaaagagagagggcaGAGTGGTCACATAAAAACAACCTGGCTGGATTTttattccttttgttttctttagttgACCACTTTTTCAATCCAATTTGACTTCTCtcatgcatgtgtatgtgtactCAAAGTGTAGAGTACAGCACGCCCTCATGCCCAATCCCACACAACTGAGGAACTCTTTGAtgtaggaaaataattaaaaagggacACATGAGCACAGGCCTTTGTTCTCTTTGATATCAAGCATTGTTAATACTTACCAATTCAAGGATGTGGACCGTGACAATGAACAACGCCAGTCACTTGAATTTCTTAAATCATTCATACATAACAGTGACGGGATAGTTTGCTCCTGGAGGTCAGTATTTTTATATGCCTACCTCCTCGGACACAATACTTAACATGTTAAATTCATCAAATAAATGGTTCTATTAAGTAATTGGCAGTTGAGGCAGAACAAAGAGCAGAAATCCCTGTTGCCCACCAGTGGTCCAaaagaggtcaaaggtcacaacaGTGGGGCACATGACCTTTTTCAGTCTCTGCTACTTGCTCTTTAAGCTGTTTCTGCTGTAGGATTGCAGTGAGggacaaaaaaaagacagggTTGGCTGCTCTCCTTGTAAATGTGTACAAGCCTTTCTCCAGTTGTCCCTCCAGTTctgatttttctgttccaaTTCAGAGggacagacaaaacaaatactggATTAACAACTCCATCTCAGAGGGTGCTGTGTAGAATAGCAATTAGCTATTCTGAGCTGAGGCATTAATGGAGGGGTGAAAGGAAGaatgtacttaaataaataaataaaccaac

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19851 lncRNA downstream 75985 31528050 ~ 31528621 (-) True G15985
TU19848 lncRNA downstream 100058 31504079 ~ 31504548 (-) True G15982
TU19842 lncRNA downstream 114770 31489261 ~ 31489836 (-) True G15976
TU19815 lncRNA downstream 123205 31476843 ~ 31481401 (-) True G15962
TU19800 lncRNA downstream 182638 31420744 ~ 31421968 (-) True G15947
TU19907 lncRNA upstream 78603 31693816 ~ 31697608 (-) True G16024
TU19910 lncRNA upstream 83923 31699136 ~ 31699400 (-) True G16026
TU19936 lncRNA upstream 103687 31718900 ~ 31720036 (-) True G16043
TU19968 lncRNA upstream 154517 31769730 ~ 31771274 (-) False G16069
TU19969 lncRNA upstream 155462 31770675 ~ 31771274 (-) True G16069
AMCG00016816 mRNA downstream 200662 31400817 ~ 31403944 (-) True AMCG00016816
AMCG00016815 mRNA downstream 216338 31380646 ~ 31388268 (-) True AMCG00016815
AMCG00016811 mRNA downstream 267326 31336445 ~ 31337280 (-) True AMCG00016811
AMCG00016812 mRNA downstream 289218 31292282 ~ 31315388 (-) True AMCG00016812
AMCG00016807 mRNA downstream 421305 31177556 ~ 31183301 (-) True AMCG00016807
AMCG00016823 mRNA upstream 28643 31643856 ~ 31653933 (-) True AMCG00016823
AMCG00016824 mRNA upstream 43035 31658248 ~ 31674496 (-) True AMCG00016824
AMCG00016831 mRNA upstream 140322 31755535 ~ 31762700 (-) True AMCG00016831
AMCG00016833 mRNA upstream 162199 31777412 ~ 31801252 (-) True AMCG00016833
AMCG00016835 mRNA upstream 187824 31803037 ~ 31818127 (-) True AMCG00016835
TU19613 other downstream 1075106 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 1402255 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 2819099 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 4175955 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 4200684 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 807845 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 882294 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 882294 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 1560863 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 1811275 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile