RNA id: TU19924



Basic Information


Item Value
RNA id TU19924
length 386
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G16037
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31755042 ~ 31755427 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gatctatttatttgtatacatttcgTGTATAACTTACAAGTACAACTCTTGCATTTTAGGTGCTTATCGATGTAATAAAAGCCCAAAGCTTTTAAACATGTTAACTAGCCAGATAAGCCATCCTGTTAGGGCATTCAAAAGTTGAAAAAATCCAAAAGGAGAAAGCATTGTGACTCTCCCTGACCAGAGCTGCAGATCCTCTGTGCTGTGAATGACCtgattaaaaatgaagccaGAAGAAGTCAACCTCCAATGATGTGCCTGACTTCCGCCTTACCAAGCATAAGTATTTGCCAACAAACTTTGGTCAAAACTTTCCCAGCATTAAATGCTTTGCAGCCGTCCTCCACCCCAAACACCACCCCTGCTCAGCAAGTTGTGGGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU19869 lncRNA upstream 110527 31615220 ~ 31644515 (+) True G15995
TU19822 lncRNA upstream 250490 31504079 ~ 31504552 (+) True G15966
TU19813 lncRNA upstream 273686 31479664 ~ 31481356 (+) True AMCG00016820
TU19814 lncRNA upstream 278824 31475307 ~ 31476218 (+) True G15961
TU19686 lncRNA upstream 721721 31033069 ~ 31033321 (+) True G15853
TU20089 lncRNA downstream 496387 32251814 ~ 32253229 (+) False AMCG00016841
TU20094 lncRNA downstream 506284 32261711 ~ 32262672 (+) True G16169
TU20144 lncRNA downstream 682827 32438254 ~ 32442585 (+) True G16211
TU20241 lncRNA downstream 1102124 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 1226352 32981779 ~ 32982330 (+) True G16323
AMCG00016830 mRNA upstream 3929 31733960 ~ 31751113 (+) True AMCG00016830
AMCG00016829 mRNA upstream 23596 31701669 ~ 31731446 (+) False AMCG00016829
AMCG00016832 mRNA upstream 53416 31700472 ~ 31701626 (+) True AMCG00016832
AMCG00016828 mRNA upstream 60291 31687002 ~ 31694751 (+) True AMCG00016828
AMCG00016825 mRNA upstream 117997 31635059 ~ 31637045 (+) True AMCG00016825
AMCG00016827 mRNA downstream 15499 31770926 ~ 31777458 (+) True AMCG00016827
AMCG00016836 mRNA downstream 269745 32025172 ~ 32034991 (+) True AMCG00016836
AMCG00016845 mRNA downstream 319324 32074751 ~ 32084572 (+) True AMCG00016845
AMCG00016844 mRNA downstream 334607 32090034 ~ 32139763 (+) True AMCG00016844
AMCG00016842 mRNA downstream 416445 32171872 ~ 32196229 (+) True AMCG00016842
TU19916 other upstream 20726 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 28025 31721939 ~ 31727017 (+) True AMCG00016829
TU19688 other upstream 693897 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 1518201 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 1641758 30109599 ~ 30113284 (+) True AMCG00016770
TU20166 other downstream 743629 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 744149 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 745369 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 1100934 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1913202 33668629 ~ 33672620 (+) True AMCG00016901

Expression Profile