RNA id: TU19969


Basic Information

Item Value
RNA id TU19969
length 482
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G16069
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31769730 ~ 31771274 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAAACTGGTGCAGGAAGCCAGTGGGGCGGCAGTAGCGGTGCCTGCAGACAACCACCAGAGCTACAAAGGAGGCCAGGAAAATGGTAGCCAATACGCCGATGGCCACAATGACAACTGTCTCCATGGCAGCCCACTGTGTCTCCAGCGTGGACGTTTCAGCAACAAGGTGACTAAATTGGTTCAGTTTGCTACAGGAACGTTTTCATAGTGTGGATTTTGTCTTCATATCCCGTTGAAGATATTTCTTCATCTGCTTTGGTTTTCAAATCGTCAGGCTGTGGCCAAATACACTTTCTCTGTGATAAATCAAGTCCAaagttctgaaatgaaaaaccaggccattgtggCAAATGTTGACTCACACCCAATGCATACAGAATGTGCGCTAATATTTATAGAGGTAAAGTACTACAGTAATGGAGTACTAGAGAAGCCactttgtgttttcaaaatgttgaatAAGAATAAGCCTGTGCCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19936 lncRNA downstream 50639 31718900 ~ 31720036 (-) True G16043
TU19910 lncRNA downstream 71275 31699136 ~ 31699400 (-) True G16026
TU19907 lncRNA downstream 73067 31693816 ~ 31697608 (-) True G16024
TU19880 lncRNA downstream 155462 31604606 ~ 31615213 (-) True G16004
TU19851 lncRNA downstream 242054 31528050 ~ 31528621 (-) True G15985
TU20077 lncRNA upstream 434449 32205723 ~ 32206877 (-) True G16154
TU20076 lncRNA upstream 435688 32206962 ~ 32208117 (-) True G16153
TU20119 lncRNA upstream 490275 32261549 ~ 32262666 (-) True AMCG00016847
TU20181 lncRNA upstream 621868 32393142 ~ 32393380 (-) True G16244
TU20182 lncRNA upstream 644917 32416191 ~ 32416444 (-) True G16245
AMCG00016831 mRNA downstream 7975 31755535 ~ 31762700 (-) True AMCG00016831
AMCG00016824 mRNA downstream 96179 31658248 ~ 31674496 (-) True AMCG00016824
AMCG00016823 mRNA downstream 116742 31643856 ~ 31653933 (-) True AMCG00016823
AMCG00016816 mRNA downstream 366731 31400817 ~ 31403944 (-) True AMCG00016816
AMCG00016815 mRNA downstream 382407 31380646 ~ 31388268 (-) True AMCG00016815
AMCG00016833 mRNA upstream 6138 31777412 ~ 31801252 (-) True AMCG00016833
AMCG00016835 mRNA upstream 31763 31803037 ~ 31818127 (-) True AMCG00016835
AMCG00016834 mRNA upstream 68557 31839831 ~ 31844052 (-) True AMCG00016834
AMCG00016838 mRNA upstream 73188 31844462 ~ 31852119 (-) True AMCG00016838
AMCG00016837 mRNA upstream 207937 31979211 ~ 32002535 (-) True AMCG00016837
TU19613 other downstream 1241175 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 1568324 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 2985168 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 4342024 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 4366753 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 651784 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 726233 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 726233 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 1404802 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 1655214 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile