RNA id: TU20094



Basic Information


Item Value
RNA id TU20094
length 962
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G16169
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32261711 ~ 32262672 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGTAGAACACGGGTTGTCTTGGGAAGAAAGTATCTTTAAGCCACTAAACATTTGATACCCAGAATAGTATCCAAAAGGTATAGTGAACCATTTTAATTGGACTTTGGCAAAAAGTTAAAAGGACCAACAATGGCGTAATGCTGGAGTAAAGTATGGGTCACTGATCTTTCCTAGGTCGCAACAATGTTTTACTTAAATGCTCTTATCTAGTGTATATCTACTCCTCATTGTGTTTGCAGCCATCATTACTGATGAACCAAATCAGGAGATGGTAGTAGGGCTGGGAGTAAGGGGGCTCAACCCAGGTGATCCCTGCCTTTGGTCATCAGGCCTCTGTGGGGTTGGCTGGTGCAGGGTATACAGCCTCTCTCACCTTGAGTACCTACTAGGAGGAACAGGCTCTAACCAGACCGCGAAGACATGCAACATGAAGGAAGACATTGTCCAGGTAAGGGATCTagcctttaaataaatacttcctATAGAAACTCAACTCTGGAGTTTGCACCACCTGTATCCGTTTTTGTCAGCAACTCGGTTAATTTTATAGAAATCCAAGAGTTTCTGCAGACTAGGCACAGACAATAagcattgataaataaaataaatgattgcatTTACCAAAACCCTCCCTTCATTGATCAGGACTGAACATCTCCCAAGTCTTTATTAAGGGTAAAATTAGGAGACCAGCTGGACAGCAGCTCATCAAGAGTCTGGTTTGAGGACCCTGCCTCACAATATTAAATGGGCATGAATAGACCCCTGCCCTGTTTAGAGAGGCTTGCGATTGATCTTGTGTGTTGTGGGTGTGACGAGATCCAGCATAAAAAGGAGCATGCACTAACACCGAAGTATCTGTTGCCTGAAAATCACATTACGTTAAAAAAAACACGGGTGCCTTTTCACTCTCTTAATGGATGcgttacacacaaaaaaggtccatttacatatatttccaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU20089 lncRNA upstream 8482 32251814 ~ 32253229 (+) False AMCG00016841
TU19924 lncRNA upstream 506284 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 617196 31615220 ~ 31644515 (+) True G15995
TU19822 lncRNA upstream 757159 31504079 ~ 31504552 (+) True G15966
TU19813 lncRNA upstream 780355 31479664 ~ 31481356 (+) True AMCG00016820
TU20144 lncRNA downstream 175582 32438254 ~ 32442585 (+) True G16211
TU20241 lncRNA downstream 594879 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 719107 32981779 ~ 32982330 (+) True G16323
TU20320 lncRNA downstream 917033 33179705 ~ 33179940 (+) True G16350
TU20321 lncRNA downstream 917567 33180239 ~ 33180439 (+) True G16351
AMCG00016841 mRNA upstream 1084 32251808 ~ 32260627 (+) True AMCG00016841
AMCG00016843 mRNA upstream 16176 32225792 ~ 32245535 (+) True AMCG00016843
AMCG00016840 mRNA upstream 45388 32210141 ~ 32216323 (+) True AMCG00016840
AMCG00016839 mRNA upstream 54837 32198948 ~ 32206874 (+) True AMCG00016839
AMCG00016842 mRNA upstream 65482 32171872 ~ 32196229 (+) True AMCG00016842
AMCG00016848 mRNA downstream 22084 32284756 ~ 32303469 (+) True AMCG00016848
AMCG00016851 mRNA downstream 131209 32393881 ~ 32434138 (+) True AMCG00016851
AMCG00016852 mRNA downstream 217992 32480664 ~ 32481807 (+) True AMCG00016852
AMCG00016853 mRNA downstream 227241 32489913 ~ 32495747 (+) True AMCG00016853
AMCG00016855 mRNA downstream 235210 32497882 ~ 32498508 (+) True AMCG00016855
TU19916 other upstream 527395 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 534694 31721939 ~ 31727017 (+) True AMCG00016829
TU19688 other upstream 1200566 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 2024870 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 2148427 30109599 ~ 30113284 (+) True AMCG00016770
TU20166 other downstream 236384 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 236904 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 238124 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 593689 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1405957 33668629 ~ 33672620 (+) True AMCG00016901

Expression Profile