RNA id: TU20144


Basic Information

Item Value
RNA id TU20144
length 4288
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G16211
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32438254 ~ 32442585 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcttttaatgaataCAAGAGTTTTACAAATAAGTTACAGTAAACCACAGTTACGTTACAAATGTTTTGCATCACGTCAGTCTGCAATTGCAAATGGTGTTTGCCTGACACAATAATGTGAATTAAACCAGGCTCTGAACGGCACGTCCGAGGAGGGCTAATGTATGGCAGCAACATACTGTTACAAGCGCTTGTTTCACAGACAGGTTAGCTTGGGCGAAGCGTTTCCTTTGTGCCACAGACGCGTTACACAAGGCATTCATTACTTTTCCTTTTGCAAGAGCAGTAACGCACTAATTGCCAGTAATATCTCTCAGTCGTAGGCAGAAGCACTAACTACAGGAAGTGATTTATACATTGTTTCCAGCTTTCGGTTATATAGTGCTTTTATCGTTATTAGCttatatttcataaaataatgacCAGGAGGCTGGATTTCACCACTGAGCCAAAAGCAACAGTCCTTCAGAACATCAAAATTATCCTTTCATGTGGTTTCAGAAATAATTCCCCTGTTCCATGTTGATTGGTGAGCTGTAATGAAACGGTAACAGGCTATGAAAATTAAAGCCCATCAAAAAAATAATCCTGATATTGTCGGCTGCTGAATTGAAGATCTTGAGAAATGCAAGTAATGCGCCATGcttataaaataacaatgataaaagtttaaaaagggATGTATTAATGGCTCCCAAATATCTCCAATTGTGTAAATAatgatcataaaataaaaatatcacttTAACCTATTTCAATTGAATATAGCCATTCCCATATCTGCTTACTAAACATTTACCCCTTCTTGGATTTCTCGTGATCATAGCAGGCTTGTAGTTCTGACataggcaaaaaataaaaccaaaatctacaaatgacagaaaaagGTTTCTTTAGCTCAGAACATCTAAAACAGATACCCAACTCAGATCAGTTTCACTTTTGTGGAAAACCccttgtggttttgtttttgtgatataTCAGATAGGCTTCGACTTAGTCATTTTATGATGGTGGTccatgtatataaattaaacatactgATATGAATATACAGTACTTTTTTCTCCATACCGTGTGTTATCCAATAACTTAAGATCAATTCTAATGGTCAATTTGTAATAacttctttaaataataatttgtaacgTAAAACACACTAAAATACCTTTAGatactatatacatttaatatgtaaCAGCCAagggtgTCCCAGtgggggggcctgtctgtgtggagtttgcatgttctctgTGCCTGCCTGGGTTTTGTCtgggcactccagtttcctcccaccatccaaagacatgtgggttaggttaattggtctctctaaattgccgtgtgtgtgttgcccagcaatggactggcatcctgtgctgggtgtattcctgccttgtgccctatgcctgccaggattggctctggcttccctgcaaccctcaccaggataagcagctttgaaaatggatggttgcAACAGCTTATTTATAACTGCTTGTTATCTTCGACTTGAAGCTAAATTGTAACAGCAGTTTCACGGTCTTCAAACACAGAGTGCCCACAGTAAACTGGGGGTGTCATATTTAAGATATACGGCAAGATACTTTGgccaaaagaaaatacatggtatacagaatatattattaggATACAAGTCGGAGATAATTTTGTTCATAGAAGAATGgactaaaaatatacattaatctAAACTAGATATACACCTTCAATAGTCGTTTATACTTGGGGCTTTTGCTTTTAAGGATGTAATTCCAGACACATTGACATCAATCCATTATCCATTTGATTAAAAAGGAATTAGTTGATTGCGGAATCGAAATTTCATGACATTAAAAACAGGTACTAAAAACCCAACGAACtctcctgcttttctttttttgtcaaaaGTTACTATTTTGGCCACTTCATTTGAAAGGGAATACTTCAGTACTTTCGAAGTTACTCTACTATTTGTTCACACAGGAAGTCAATGGGAGGCTCCTACACTAAGATGATGATggtaatattatttatataaatcataataatacaactatttGGAAAACTGTCACCTGCCTCACAGAGATAAtttgccatgtttttatttgtatatatttatatagatgtatttattaacacagaaaataaagctacaATTAAGTGCCTAgagaatttatttttcccttgtATTTTAGGGAAGAAACTAGAAACACAGATAAGTAAAGGGCAGGTGATCTTATTCAGTCCAGATCTTCTGTATGAACATACTTTTTTGTCTCTGTAGGAGGAGGGGAGAAGTATCTTTCTCACTCAACTGAAACAGTTTAGTCATTTGAAGAGAAGTAGTTACAGAGATTGATACTGTTTGATGCATTGAGTAAAACCATTAAGCTGTGATTAGCAGAACAAACAGAATAGAGACCATCCTTCTGACTCTCCACAGGACCTGCTATGTGCCCGAGGCTGGATCGGTTCCCCTTTAGCGGTTTTATGTTCAGctttctaattaaatcaatttagaaATAAGAAGAAGGTATCTGAGCTGAACATTCAGGTGAAATTGAACAAccatgatttgtatttaatataattcagaTTTGCATAATAATAAGTTTGTATTGTCGAAGACGTGTGGAGGAGGTTCTCAAAGGAAATCTGGCAAGAGGTGGCACTTAACTTATAGTCggacaaaaagttaaaaaatattaacaaactgtagaaaacaataacatacatGATCCACACAAATGCCATTTAACTACATGTGCTGCagttactgtactgtgctgtattttcttttctttttccactaGTCTAACTTTTGCATTATGCCACTTTTgagtttccaaaaataaaaccagtttttTAACTGCAAGTcactaataattgtattatgataataataataaacaagtgcaAAAGGCATTGAAAGTCAGCCATTCTGGTGAAAGGTAAAGTGAAAGAGACCATAGCGATCGTGGCTGCACTGCTGTCTGTATATTGGTGCTGTAGTCCCTCACAGGCAAGGTAGAGGGCTCAGTCCTGTGTTTCTTTCTGGTGCAGCAGTAACGTACCACAGGGAGGCCAACAATAGACCGGGAACAGCAGGGACTCCTAGACATACAGGCACCATGCGTGAGTGTTGAAGGTCCAGCTCTACTCTGGATCAgtcataattaaacaaaagcacacattcattttgtcggttttaaaatgtttgctttgcaGGAAATCTATTACATGTTTTTGCAAACCCACTGAGGCAAGCAGCTGCAACATTAGCAACACAGAAAAGCTGCCCAGCACTATATTTCCTCCCAGCGAGAAGTGTTTCAAAAAGCTTAAGCAGACCTCTGATTCTACCGTACCAGGAGACACTGTCCCTGCATCTGCAGTCtgatttctgaagaaaagaaacgTTACATTGGAATAAGAGGTTGTGTGCCTTCATGGATACAAAAAGCAATAAGTACAATAAAGCTAGTCTGGCTGAAGGATTGCTGTAGTTTGCTCTGCTGTGAAAGACTCAGGTGAGAGATTGGAAGGGATTTTCTCCTGTTGAACGAGAGCCAATTGTACAAAGGGTTTGTTTTCAAACAGGTGaaacgggggggggggcggctcagatacagagacacagctGATGTTGTGAAGCCCAGCAGATGTAGCCCGTTGTGAAATGACACTTAGATTTCAGCTGCTTTTGCCAATAGTAAgtagaaaaaaattaaacagcCTTCCAAGAATGAATGCAGCAACTTTAGCTAGTGCTGGAGTTGATGAAGAGGAGGGGTAGAGAGCTCCAGTTACACACAGGGCCACATTTGTCTCTGGTTTTCATGCCATCTCCCATCTTAATTGTGGAGAGATCGCTCAGCTATCTGACTCCCTTACCAATTCAAAGGCGCCAGCAGAGCCTTAAGCAAATCAGCCCTATGGTTTGGAGTTGCCTACCCCCGCTCTGGACCTTCATGGTAAGTGCACCGTGTCTGGGAGTCTAGGACTGTCCACCCAGAGAAGTGCCTGGTGCTGTTACATAGCCCAGCGATGTGATGATAATGGTACAGGGCTACGGGAACGGGCAGAGACTGTTACCCGAGTCCTTCATTTGTGGGCAAACCCCAACAACAGAGCAACGCATCCGATGCCCCAGCGCTGACAAGGACAACATCACTGACAGAGCAGAAGGAGAGGGGCGCAGGTGAGGTACCCCAGGTCACCATGGCTACATGACGTCTATCTCCCTCTCAATCCCGACGTACTTCAGTGCGTCCGCTTGGCTGTATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20094 lncRNA upstream 175582 32261711 ~ 32262672 (+) True G16169
TU20089 lncRNA upstream 185025 32251814 ~ 32253229 (+) False AMCG00016841
TU19924 lncRNA upstream 682827 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 793739 31615220 ~ 31644515 (+) True G15995
TU19822 lncRNA upstream 933702 31504079 ~ 31504552 (+) True G15966
TU20241 lncRNA downstream 414966 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 539194 32981779 ~ 32982330 (+) True G16323
TU20320 lncRNA downstream 737120 33179705 ~ 33179940 (+) True G16350
TU20321 lncRNA downstream 737654 33180239 ~ 33180439 (+) True G16351
TU20374 lncRNA downstream 882509 33325094 ~ 33328342 (+) True G16395
AMCG00016851 mRNA upstream 4116 32393881 ~ 32434138 (+) True AMCG00016851
AMCG00016848 mRNA upstream 134785 32284756 ~ 32303469 (+) True AMCG00016848
AMCG00016841 mRNA upstream 177627 32251808 ~ 32260627 (+) True AMCG00016841
AMCG00016843 mRNA upstream 192719 32225792 ~ 32245535 (+) True AMCG00016843
AMCG00016840 mRNA upstream 221931 32210141 ~ 32216323 (+) True AMCG00016840
AMCG00016852 mRNA downstream 38079 32480664 ~ 32481807 (+) True AMCG00016852
AMCG00016853 mRNA downstream 47328 32489913 ~ 32495747 (+) True AMCG00016853
AMCG00016855 mRNA downstream 55297 32497882 ~ 32498508 (+) True AMCG00016855
AMCG00016854 mRNA downstream 57106 32499691 ~ 32503372 (+) False AMCG00016854
AMCG00016861 mRNA downstream 148182 32590767 ~ 32607382 (+) True AMCG00016861
TU19916 other upstream 703938 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 711237 31721939 ~ 31727017 (+) True AMCG00016829
TU19688 other upstream 1377109 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 2201413 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 2324970 30109599 ~ 30113284 (+) True AMCG00016770
TU20166 other downstream 56471 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 56991 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 58211 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 413776 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1226044 33668629 ~ 33672620 (+) True AMCG00016901

Expression Profile