RNA id: TU20185


Basic Information

Item Value
RNA id TU20185
length 241
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G16248
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32425716 ~ 32425956 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGTCTTCAAGATGATGGCAATGTAGTCCTTTCTGAAGGAGCTGACATACATCAGCACAGCTGGCTTCTGGATGGTGCTGAAGCTGAGCTCGATCTCCTCACTGGTCTGGTTGTAGCCCAGGCTGAAGTTGTGGGGGTCCAGTGTGTTGGCGAAGCGCGCGTCCTCCGATATGGCCTCCTTGCGGATGTTGTAGCGCAGCCATGTCCCCGACTCAAAGTAGCCCCCAATATCTGTTAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20182 lncRNA downstream 9272 32416191 ~ 32416444 (-) True G16245
TU20181 lncRNA downstream 32336 32393142 ~ 32393380 (-) True G16244
TU20119 lncRNA downstream 163050 32261549 ~ 32262666 (-) True AMCG00016847
TU20076 lncRNA downstream 217599 32206962 ~ 32208117 (-) True G16153
TU20077 lncRNA downstream 218839 32205723 ~ 32206877 (-) True G16154
TU20186 lncRNA upstream 1896 32427852 ~ 32428080 (-) True G16249
TU20187 lncRNA upstream 8280 32434236 ~ 32436683 (-) True G16250
TU20246 lncRNA upstream 428825 32854781 ~ 32857465 (-) True G16292
TU20247 lncRNA upstream 433285 32859241 ~ 32861597 (-) True G16293
TU20285 lncRNA upstream 558298 32984254 ~ 32984464 (-) True G16325
AMCG00016850 mRNA downstream 42521 32382683 ~ 32383195 (-) True AMCG00016850
AMCG00016849 mRNA downstream 100555 32304650 ~ 32325161 (-) True AMCG00016849
AMCG00016846 mRNA downstream 141676 32269963 ~ 32284040 (-) True AMCG00016846
AMCG00016847 mRNA downstream 157748 32261928 ~ 32267968 (-) False AMCG00016847
AMCG00016837 mRNA downstream 423181 31979211 ~ 32002535 (-) True AMCG00016837
AMCG00016856 mRNA upstream 12280 32438236 ~ 32469626 (-) True AMCG00016856
AMCG00016860 mRNA upstream 43939 32469895 ~ 32470107 (-) True AMCG00016860
AMCG00016859 mRNA upstream 76609 32502565 ~ 32507319 (-) False AMCG00016859
AMCG00016858 mRNA upstream 82393 32508349 ~ 32533759 (-) True AMCG00016858
AMCG00016857 mRNA upstream 119663 32545619 ~ 32546814 (-) True AMCG00016857
TU20184 other downstream 2278 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 1896216 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2223365 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 3640209 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 4997065 27424893 ~ 27428651 (-) True G15076
TU20188 other upstream 71551 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 71551 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 750120 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 1000532 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 1062769 33488725 ~ 33513579 (-) False AMCG00016891

Expression Profile